PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
OoffiChr02g00611.1 Rosmarinic Acid C4H medium pass
OoffiChr02g00613.1 Rosmarinic Acid C4H medium pass
OoffiChr02g00614.1 Rosmarinic Acid C4H low borderline
OoffiChr02g00615.1 Rosmarinic Acid C4H low borderline
OoffiChr02g00616.1 Rosmarinic Acid C4H medium pass
OoffiChr02g00621.1 Rosmarinic Acid C4H medium pass
OoffiChr02g00622.1 Rosmarinic Acid C4H low borderline
OoffiChr02g00623.1 Rosmarinic Acid C4H low borderline
OoffiChr02g00625.1 Rosmarinic Acid C4H low borderline
OoffiChr02g00664.1 Rosmarinic Acid C4H low borderline
OoffiChr02g00767.1 Rosmarinic Acid C4H low borderline
OoffiChr02g00843.1 Rosmarinic Acid C4H low borderline
OoffiChr02g00843.2 Rosmarinic Acid C4H low borderline
OoffiChr02g00876.1 Rosmarinic Acid C4H medium pass
OoffiChr02g00877.1 Rosmarinic Acid C4H medium pass
OoffiChr02g00880.1 Rosmarinic Acid C4H low borderline
OoffiChr02g00881.1 Rosmarinic Acid C4H low borderline
OoffiChr02g01493.1 Rosmarinic Acid C4H medium pass
OoffiChr02g01506.1 Rosmarinic Acid C4H medium pass
OoffiChr02g01507.1 Rosmarinic Acid C4H medium pass
OoffiChr02g01559.1 Rosmarinic Acid C4H low borderline
OoffiChr02g01565.1 Rosmarinic Acid C4H low borderline
OoffiChr02g01565.2 Rosmarinic Acid C4H low borderline
OoffiChr02g01565.3 Rosmarinic Acid C4H low borderline
OoffiChr02g01566.1 Rosmarinic Acid C4H low borderline
OoffiChr02g01567.1 Rosmarinic Acid C4H low borderline
OoffiChr02g01676.1 Rosmarinic Acid C4H medium pass
OoffiChr02g01751.1 Rosmarinic Acid C4H medium pass
OoffiChr02g01876.1 Rosmarinic Acid C4H medium pass
OoffiChr02g01877.1 Rosmarinic Acid C4H medium pass
OoffiChr02g01887.1 Rosmarinic Acid C4H low borderline
OoffiChr02g01925.1 Rosmarinic Acid C4H low borderline
OoffiChr02g02039.1 Rosmarinic Acid C4H low borderline
OoffiChr02g02040.1 Rosmarinic Acid C4H low borderline
OoffiChr02g02547.1 Rosmarinic Acid C4H low borderline
OoffiChr02g02548.1 Rosmarinic Acid C4H low borderline
OoffiChr03g00113.1 Rosmarinic Acid C4H medium pass
OoffiChr03g00223.1 Rosmarinic Acid C4H low borderline
OoffiChr03g00259.1 Rosmarinic Acid C4H low borderline
OoffiChr03g00485.1 Rosmarinic Acid C4H low borderline
OoffiChr03g00866.1 Rosmarinic Acid C4H low borderline
OoffiChr03g00888.1 Rosmarinic Acid C4H low borderline
OoffiChr03g01003.1 Rosmarinic Acid C4H low borderline
OoffiChr03g01010.1 Rosmarinic Acid C4H low borderline
OoffiChr03g01498.1 Rosmarinic Acid C4H low borderline
OoffiChr03g01680.2 Rosmarinic Acid C4H low borderline
OoffiChr03g01699.1 Rosmarinic Acid C4H low borderline
OoffiChr03g01699.2 Rosmarinic Acid C4H low borderline
OoffiChr03g01866.1 Rosmarinic Acid C4H low borderline
OoffiChr03g01933.1 Rosmarinic Acid C4H low borderline