PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
OoffiChr12g01575.1 Rosmarinic Acid C4H low borderline
OoffiChr01g00427.1 Rosmarinic Acid CPR medium pass
OoffiChr01g02676.1 Rosmarinic Acid CPR low borderline
OoffiChr01g02676.2 Rosmarinic Acid CPR low borderline
OoffiChr02g00036.1 Rosmarinic Acid CPR medium pass
OoffiChr02g01695.1 Rosmarinic Acid CPR low borderline
OoffiChr02g01698.4 Rosmarinic Acid CPR low borderline
OoffiChr02g01698.5 Rosmarinic Acid CPR low borderline
OoffiChr02g01698.6 Rosmarinic Acid CPR low borderline
OoffiChr03g01472.1 Rosmarinic Acid CPR medium pass
OoffiChr03g01473.1 Rosmarinic Acid CPR medium pass
OoffiChr04g02053.1 Rosmarinic Acid CPR medium pass
OoffiChr05g01061.1 Rosmarinic Acid CPR medium pass
OoffiChr08g00685.1 Rosmarinic Acid CPR medium pass
OoffiChr08g00685.2 Rosmarinic Acid CPR medium pass
OoffiChr08g01739.1 Rosmarinic Acid CPR low borderline
OoffiChr08g01739.2 Rosmarinic Acid CPR low borderline
OoffiChr09g01523.1 Rosmarinic Acid CPR medium pass
OoffiChr10g00390.1 Rosmarinic Acid CPR medium pass
OoffiChr12g01782.1 Rosmarinic Acid CPR low borderline
OoffiChr12g01782.2 Rosmarinic Acid CPR low borderline
OoffiChr01g00855.1 Rosmarinic Acid HPPR medium pass
OoffiChr04g00031.1 Rosmarinic Acid HPPR medium pass
OoffiChr04g00033.1 Rosmarinic Acid HPPR medium pass
OoffiChr04g00033.2 Rosmarinic Acid HPPR medium pass
OoffiChr04g00034.1 Rosmarinic Acid HPPR medium pass
OoffiChr04g00034.2 Rosmarinic Acid HPPR medium pass
OoffiChr04g00034.3 Rosmarinic Acid HPPR medium pass
OoffiChr08g01140.1 Rosmarinic Acid HPPR low borderline
OoffiChr02g02190.1 Rosmarinic Acid PAL high pass
OoffiChr02g02191.1 Rosmarinic Acid PAL high pass
OoffiChr02g02192.1 Rosmarinic Acid PAL high pass
OoffiChr02g02193.1 Rosmarinic Acid PAL high pass
OoffiChr04g01221.1 Rosmarinic Acid PAL high pass
OoffiChr04g01223.1 Rosmarinic Acid PAL high pass
OoffiChr05g01430.1 Rosmarinic Acid PAL high pass
OoffiChr10g00629.1 Rosmarinic Acid PAL high pass
OoffiChr01g00016.1 Rosmarinic Acid RAS medium pass
OoffiChr01g00547.1 Rosmarinic Acid RAS low borderline
OoffiChr01g00592.1 Rosmarinic Acid RAS low borderline
OoffiChr01g00849.1 Rosmarinic Acid RAS low borderline
OoffiChr01g01184.1 Rosmarinic Acid RAS low borderline
OoffiChr01g01389.1 Rosmarinic Acid RAS medium pass
OoffiChr01g01403.1 Rosmarinic Acid RAS medium pass
OoffiChr01g01998.1 Rosmarinic Acid RAS low borderline
OoffiChr01g02905.1 Rosmarinic Acid RAS medium pass
OoffiChr02g00133.1 Rosmarinic Acid RAS low borderline
OoffiChr02g01274.1 Rosmarinic Acid RAS low borderline
OoffiChr02g02109.1 Rosmarinic Acid RAS medium pass
OoffiChr02g02109.2 Rosmarinic Acid RAS medium pass