PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
OoffiChr02g02747.1 Rosmarinic Acid RAS low borderline
OoffiChr04g00227.1 Rosmarinic Acid RAS low borderline
OoffiChr04g01137.1 Rosmarinic Acid RAS medium pass
OoffiChr04g01177.1 Rosmarinic Acid RAS medium pass
OoffiChr04g01742.1 Rosmarinic Acid RAS low borderline
OoffiChr04g02118.1 Rosmarinic Acid RAS medium pass
OoffiChr05g00116.1 Rosmarinic Acid RAS medium pass
OoffiChr05g00472.1 Rosmarinic Acid RAS low borderline
OoffiChr05g00815.1 Rosmarinic Acid RAS low borderline
OoffiChr05g01879.1 Rosmarinic Acid RAS low borderline
OoffiChr06g00343.1 Rosmarinic Acid RAS medium pass
OoffiChr06g00534.1 Rosmarinic Acid RAS medium pass
OoffiChr06g00557.1 Rosmarinic Acid RAS medium pass
OoffiChr06g00558.1 Rosmarinic Acid RAS medium pass
OoffiChr06g02312.1 Rosmarinic Acid RAS low borderline
OoffiChr06g02405.1 Rosmarinic Acid RAS low borderline
OoffiChr07g00737.1 Rosmarinic Acid RAS medium pass
OoffiChr07g00928.1 Rosmarinic Acid RAS medium pass
OoffiChr08g00561.1 Rosmarinic Acid RAS medium pass
OoffiChr08g01746.2 Rosmarinic Acid RAS medium pass
OoffiChr09g00759.1 Rosmarinic Acid RAS medium pass
OoffiChr10g00633.1 Rosmarinic Acid RAS low borderline
OoffiChr10g01260.1 Rosmarinic Acid RAS medium pass
OoffiChr11g01667.1 Rosmarinic Acid RAS low borderline
OoffiChr11g01667.2 Rosmarinic Acid RAS low borderline
OoffiChr12g01257.1 Rosmarinic Acid RAS low borderline
OoffiChr01g00538.1 Rosmarinic Acid TAT medium pass
OoffiChr01g00538.2 Rosmarinic Acid TAT medium pass
OoffiChr02g01234.1 Rosmarinic Acid TAT medium pass
OoffiChr02g01235.1 Rosmarinic Acid TAT medium pass
OoffiChr02g01262.1 Rosmarinic Acid TAT medium pass
OoffiChr02g01262.2 Rosmarinic Acid TAT medium pass
OoffiChr02g01262.3 Rosmarinic Acid TAT medium pass
OoffiChr06g01306.1 Rosmarinic Acid TAT medium pass
OoffiChr06g01306.2 Rosmarinic Acid TAT medium pass
OoffiChr06g01306.3 Rosmarinic Acid TAT medium pass
OoffiChr11g01059.1 Rosmarinic Acid TAT medium pass
OoffiChr11g01063.1 Rosmarinic Acid TAT medium pass
OoffiChr11g01078.1 Rosmarinic Acid TAT low borderline
OoffiChr11g01410.1 Rosmarinic Acid TAT medium pass
OoffiChr02g01676.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr02g01887.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr02g01925.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr02g02547.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr02g02548.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr03g02371.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr05g00010.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr05g00689.1 Steroid BR6OX1/CYP85A1 low borderline
OoffiChr05g00689.3 Steroid BR6OX1/CYP85A1 low borderline
OoffiChr06g01688.1 Steroid BR6OX1/CYP85A1 low borderline