PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OoffiChr11g00159.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr11g00167.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr11g00198.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr11g00363.1 Phenylpropanoid C3'H/CYP98A medium borderline
OoffiChr11g00711.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr11g00804.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr11g00883.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr11g00891.1 Phenylpropanoid C3'H/CYP98A medium pass
OoffiChr12g00118.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr12g00221.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr12g00367.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr12g00408.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr12g00471.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr12g00749.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr12g00936.1 Phenylpropanoid C3'H/CYP98A medium borderline
OoffiChr12g01186.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr12g01187.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr12g01188.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr12g01189.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr12g01574.1 Phenylpropanoid C3'H/CYP98A medium borderline
OoffiChr12g01574.2 Phenylpropanoid C3'H/CYP98A medium borderline
OoffiChr12g01574.3 Phenylpropanoid C3'H/CYP98A medium pass
OoffiChr12g01575.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g00739.1 Phenylpropanoid C4H/CYP73A low borderline
OoffiChr01g02652.1 Phenylpropanoid C4H/CYP73A medium borderline
OoffiChr01g02652.2 Phenylpropanoid C4H/CYP73A medium borderline
OoffiChr01g02797.1 Phenylpropanoid C4H/CYP73A medium borderline
OoffiChr02g00608.1 Phenylpropanoid C4H/CYP73A low borderline
OoffiChr02g00881.1 Phenylpropanoid C4H/CYP73A low borderline
OoffiChr02g01565.1 Phenylpropanoid C4H/CYP73A low borderline
OoffiChr03g01933.1 Phenylpropanoid C4H/CYP73A low borderline
OoffiChr06g00095.1 Phenylpropanoid C4H/CYP73A low borderline
OoffiChr07g02296.1 Phenylpropanoid C4H/CYP73A medium borderline
OoffiChr08g00914.1 Phenylpropanoid C4H/CYP73A low borderline
OoffiChr08g01223.1 Phenylpropanoid C4H/CYP73A low borderline
OoffiChr09g01380.1 Phenylpropanoid C4H/CYP73A low borderline
OoffiChr10g00927.1 Phenylpropanoid C4H/CYP73A low borderline
OoffiChr10g00928.3 Phenylpropanoid C4H/CYP73A low borderline
OoffiChr12g00133.1 Phenylpropanoid C4H/CYP73A low borderline
OoffiChr01g01668.1 Phenylpropanoid CAD medium borderline
OoffiChr01g01732.1 Phenylpropanoid CAD low borderline
OoffiChr01g03216.1 Phenylpropanoid CAD low borderline
OoffiChr01g03217.1 Phenylpropanoid CAD medium borderline
OoffiChr02g00632.1 Phenylpropanoid CAD medium pass
OoffiChr02g01471.1 Phenylpropanoid CAD low borderline
OoffiChr02g01875.1 Phenylpropanoid CAD low borderline
OoffiChr02g01875.2 Phenylpropanoid CAD low borderline
OoffiChr02g01884.1 Phenylpropanoid CAD low borderline
OoffiChr03g00587.1 Phenylpropanoid CAD low borderline
OoffiChr03g00855.1 Phenylpropanoid CAD medium pass