PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OoffiChr11g00858.2 Terpenoid BAHD medium pass
OoffiChr11g00858.3 Terpenoid BAHD medium pass
OoffiChr11g00858.4 Terpenoid BAHD medium pass
OoffiChr11g00858.5 Terpenoid BAHD medium pass
OoffiChr11g00858.6 Terpenoid BAHD medium pass
OoffiChr11g00858.8 Terpenoid BAHD medium pass
OoffiChr11g00858.9 Terpenoid BAHD medium pass
OoffiChr11g00864.1 Terpenoid BAHD low borderline
OoffiChr11g00865.1 Terpenoid BAHD low borderline
OoffiChr11g00866.1 Terpenoid BAHD medium pass
OoffiChr11g00936.1 Terpenoid BAHD low borderline
OoffiChr11g00977.1 Terpenoid BAHD medium pass
OoffiChr11g01045.1 Terpenoid BAHD medium pass
OoffiChr11g01045.2 Terpenoid BAHD medium pass
OoffiChr11g01370.1 Terpenoid BAHD medium pass
OoffiChr11g01370.2 Terpenoid BAHD medium pass
OoffiChr11g01370.3 Terpenoid BAHD medium pass
OoffiChr11g01576.1 Terpenoid BAHD medium pass
OoffiChr12g00345.1 Terpenoid BAHD medium pass
OoffiChr12g00714.1 Terpenoid BAHD medium pass
OoffiChr12g00715.1 Terpenoid BAHD low borderline
OoffiChr12g00716.1 Terpenoid BAHD medium pass
OoffiChr12g00717.1 Terpenoid BAHD low borderline
OoffiChr12g00899.1 Terpenoid BAHD medium pass
OoffiChr12g00899.2 Terpenoid BAHD medium pass
OoffiChr12g00899.3 Terpenoid BAHD medium pass
OoffiChr12g00913.1 Terpenoid BAHD medium pass
OoffiChr12g01131.1 Terpenoid BAHD medium pass
OoffiChr12g01160.1 Terpenoid BAHD medium pass
OoffiChr12g01207.1 Terpenoid BAHD medium pass
OoffiChr12g01207.2 Terpenoid BAHD medium pass
OoffiChr12g01207.3 Terpenoid BAHD medium pass
OoffiChr12g01207.4 Terpenoid BAHD medium pass
OoffiChr12g01207.5 Terpenoid BAHD medium pass
OoffiChr12g01257.1 Terpenoid BAHD low borderline
OoffiChr12g01438.1 Terpenoid BAHD medium pass
OoffiChr12g01570.1 Terpenoid BAHD medium pass
OoffiChr01g03053.1 Terpenoid CMK/IspE high pass
OoffiChr01g03053.2 Terpenoid CMK/IspE high pass
OoffiChr01g03053.3 Terpenoid CMK/IspE high pass
OoffiChr08g01740.1 Terpenoid CMK/IspE low borderline
OoffiChr01g00860.1 Terpenoid CYP71 medium borderline
OoffiChr01g00860.2 Terpenoid CYP71 low borderline
OoffiChr01g01155.1 Terpenoid CYP71 medium pass
OoffiChr01g01496.1 Terpenoid CYP71 medium borderline
OoffiChr01g01845.1 Terpenoid CYP71 low borderline
OoffiChr01g03999.1 Terpenoid CYP71 medium borderline
OoffiChr01g03999.2 Terpenoid CYP71 medium borderline
OoffiChr02g00081.1 Terpenoid CYP71 medium pass
OoffiChr02g00137.1 Terpenoid CYP71 medium pass