PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OoffiChr05g01407.1 Flavonoid F3H medium pass
OoffiChr05g02207.1 Flavonoid F3H medium pass
OoffiChr06g00386.1 Flavonoid F3H medium borderline
OoffiChr06g00481.1 Flavonoid F3H low borderline
OoffiChr06g00482.1 Flavonoid F3H medium borderline
OoffiChr06g00483.1 Flavonoid F3H medium borderline
OoffiChr06g00483.2 Flavonoid F3H medium borderline
OoffiChr06g00484.1 Flavonoid F3H low borderline
OoffiChr06g00908.1 Flavonoid F3H medium borderline
OoffiChr06g00910.1 Flavonoid F3H medium borderline
OoffiChr06g01701.1 Flavonoid F3H medium borderline
OoffiChr07g00013.1 Flavonoid F3H low borderline
OoffiChr07g00369.1 Flavonoid F3H medium borderline
OoffiChr07g00370.1 Flavonoid F3H medium pass
OoffiChr07g00440.1 Flavonoid F3H medium borderline
OoffiChr07g00442.1 Flavonoid F3H medium pass
OoffiChr07g01499.1 Flavonoid F3H medium pass
OoffiChr08g01388.1 Flavonoid F3H medium borderline
OoffiChr08g01903.1 Flavonoid F3H medium borderline
OoffiChr09g00070.1 Flavonoid F3H low borderline
OoffiChr09g00081.1 Flavonoid F3H low borderline
OoffiChr09g00934.1 Flavonoid F3H medium borderline
OoffiChr09g00935.1 Flavonoid F3H medium borderline
OoffiChr10g00407.1 Flavonoid F3H medium borderline
OoffiChr10g01356.1 Flavonoid F3H low borderline
OoffiChr10g01357.1 Flavonoid F3H low borderline
OoffiChr10g01359.1 Flavonoid F3H low borderline
OoffiChr10g01359.2 Flavonoid F3H low borderline
OoffiChr10g01359.3 Flavonoid F3H low borderline
OoffiChr10g01359.4 Flavonoid F3H low borderline
OoffiChr10g01360.1 Flavonoid F3H low borderline
OoffiChr10g01360.2 Flavonoid F3H low borderline
OoffiChr10g01360.3 Flavonoid F3H low borderline
OoffiChr10g01424.1 Flavonoid F3H medium pass
OoffiChr10g01425.1 Flavonoid F3H medium borderline
OoffiChr10g01425.2 Flavonoid F3H medium borderline
OoffiChr10g01597.1 Flavonoid F3H medium borderline
OoffiChr10g01603.1 Flavonoid F3H medium borderline
OoffiChr10g01604.1 Flavonoid F3H low borderline
OoffiChr10g01605.1 Flavonoid F3H medium pass
OoffiChr10g01606.1 Flavonoid F3H medium borderline
OoffiChr10g01606.2 Flavonoid F3H medium borderline
OoffiChr10g01606.4 Flavonoid F3H medium borderline
OoffiChr10g01606.5 Flavonoid F3H medium borderline
OoffiChr10g01608.1 Flavonoid F3H medium borderline
OoffiChr11g00418.1 Flavonoid F3H medium borderline
OoffiChr12g00748.1 Flavonoid F3H low borderline
OoffiChr13g00146.1 Flavonoid F3H medium borderline
OoffiChr01g01692.1 Flavonoid FLS medium borderline
OoffiChr03g03579.1 Flavonoid FLS low borderline