PlantSME Plant secondary metabolism enzyme database

Silene latifolia (silene_latifolia)

Imported from atlas release summary for Silene latifolia.

2119
Candidate Protein Records
1810
Pathway-Level Records
4435
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 29.45% Alkaloid pathway 22.54% Phenylpropanoid pathway 20.39% Flavonoid pathway 13.81% Rosmarinic acid pathway 8.9% Steroid pathway 4.92%
Family Distribution
BAHD 6.07% C3'H/CYP98A 5.82% C4H 5.64% UGT 4.24% UFGT 4.04% POD 3.99% 7DLGT 3.97% IFS 3.47%
Other Families 62.77%
More Families (96)
CYP76 153 3.45% F3H 152 3.43% 4CL 147 3.31% T3O 144 3.25% DWF4/CYP90B1 114 2.57% NMT 102 2.3% CODM/T6ODM 93 2.1% H6H 85 1.92% F3'H/CYP75B 84 1.89% RAS 71 1.6% BR6OX2/CYP85A2 70 1.58% HCT 66 1.49% STR 65 1.47% CAD 61 1.38% PYKS 55 1.24% CAS 54 1.22% TRI/TRII 53 1.2% CYP71 52 1.17% PMT 46 1.04% TPS 44 0.99% GES 43 0.97% CSE 42 0.95% COMT 41 0.92% SMT1/SMT2/SMT3 40 0.9% G8O/G8H 39 0.88% CYP90D1 39 0.88% 7DLH 37 0.83% GS 36 0.81% LAC 32 0.72% IFR 31 0.7% SLS 29 0.65% NCS 29 0.65% ANR 28 0.63% BBE 27 0.61% T16H 27 0.61% SGD 26 0.59% 16OMT 25 0.56% TAT 25 0.56% FNS 24 0.54% CYP51G1 24 0.54% F3'5'H/CYP75A 22 0.5% IO 21 0.47% ANS/LDOX 21 0.47% CHS 21 0.47% BR6OX1/CYP85A1 21 0.47% CPD/CYP90A1 19 0.43% F5H/CYP84A 18 0.41% CCR 16 0.36% 8HGO 15 0.34% COR 15 0.34% TYDC_DDC 14 0.32% CNMT 12 0.27% MPO 12 0.27% CPR 12 0.27% FPPS 11 0.25% ROT3/CYP90C1 10 0.23% LAMT 9 0.2% PAL 9 0.2% HPPR 9 0.2% SQS/FDFT1 9 0.2% SQE 8 0.18% AACT 8 0.18% XMT_MXMT_DXMT 7 0.16% CYP719 7 0.16% DWF7 7 0.16% SMO1/SMO2 6 0.14% HMGR 6 0.14% FLS 5 0.11% CCoAOMT 5 0.11% DXS 5 0.11% GGPPS 5 0.11% MVK 5 0.11% ISY 4 0.09% DFR 4 0.09% CHI 4 0.09% HYD1 4 0.09% FK 4 0.09% DXR 4 0.09% TDC 3 0.07% CYP80B1 3 0.07% DWF1 3 0.07% DET2 3 0.07% PMK 3 0.07% MVD 3 0.07% ADC 2 0.05% IDI 2 0.05% GPPS 2 0.05% HMGS 2 0.05% HDR/IspH 2 0.05% 6OMT_4OMT_SOMT 1 0.02% CPI1 1 0.02% DWF5 1 0.02% HDS/IspG 1 0.02% MDS/IspF 1 0.02% CMK/IspE 1 0.02% MCT/IspD 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 18 BAHD (209) View species results
Alkaloid pathway 408 22 7DLGT (78) View species results
Phenylpropanoid pathway 369 11 POD (160) View species results
Flavonoid pathway 250 11 UFGT (172) View species results
Rosmarinic acid pathway 161 7 C4H (57) View species results
Steroid pathway 89 12 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1595 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 406 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Protein/Isoform Record Pathway Family Confidence Status Best Target
silene_latifolia_GWHPCBIJ029634 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
silene_latifolia_GWHPCBIJ030245 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
silene_latifolia_GWHPCBIJ031788 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
silene_latifolia_GWHPCBIJ031789 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
silene_latifolia_GWHPCBIJ034368 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
silene_latifolia_GWHPCBIJ034400 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
silene_latifolia_GWHPCBIJ034623 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
silene_latifolia_GWHPCBIJ035057 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
silene_latifolia_GWHPCBIJ035099 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
silene_latifolia_GWHPCBIJ035567 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
silene_latifolia_GWHPCBIJ036164 Alkaloid STR low borderline STR__00003__sp_Q9M1B4_SSL13_ARATH
silene_latifolia_GWHPCBIJ036180 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
silene_latifolia_GWHPCBIJ036353 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
silene_latifolia_GWHPCBIJ036419 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
silene_latifolia_GWHPCBIJ036500 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR