Silene latifolia (silene_latifolia)
Imported from atlas release summary for Silene latifolia.
2119
Candidate Protein Records
1810
Pathway-Level Records
4435
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4435
Family-Level Calls
BAHD
6.07%
C3'H/CYP98A
5.82%
C4H
5.64%
UGT
4.24%
UFGT
4.04%
POD
3.99%
7DLGT
3.97%
IFS
3.47%
Other Families
62.77%
More Families (96)
CYP76
153
3.45%
F3H
152
3.43%
4CL
147
3.31%
T3O
144
3.25%
DWF4/CYP90B1
114
2.57%
NMT
102
2.3%
CODM/T6ODM
93
2.1%
H6H
85
1.92%
F3'H/CYP75B
84
1.89%
RAS
71
1.6%
BR6OX2/CYP85A2
70
1.58%
HCT
66
1.49%
STR
65
1.47%
CAD
61
1.38%
PYKS
55
1.24%
CAS
54
1.22%
TRI/TRII
53
1.2%
CYP71
52
1.17%
PMT
46
1.04%
TPS
44
0.99%
GES
43
0.97%
CSE
42
0.95%
COMT
41
0.92%
SMT1/SMT2/SMT3
40
0.9%
G8O/G8H
39
0.88%
CYP90D1
39
0.88%
7DLH
37
0.83%
GS
36
0.81%
LAC
32
0.72%
IFR
31
0.7%
SLS
29
0.65%
NCS
29
0.65%
ANR
28
0.63%
BBE
27
0.61%
T16H
27
0.61%
SGD
26
0.59%
16OMT
25
0.56%
TAT
25
0.56%
FNS
24
0.54%
CYP51G1
24
0.54%
F3'5'H/CYP75A
22
0.5%
IO
21
0.47%
ANS/LDOX
21
0.47%
CHS
21
0.47%
BR6OX1/CYP85A1
21
0.47%
CPD/CYP90A1
19
0.43%
F5H/CYP84A
18
0.41%
CCR
16
0.36%
8HGO
15
0.34%
COR
15
0.34%
TYDC_DDC
14
0.32%
CNMT
12
0.27%
MPO
12
0.27%
CPR
12
0.27%
FPPS
11
0.25%
ROT3/CYP90C1
10
0.23%
LAMT
9
0.2%
PAL
9
0.2%
HPPR
9
0.2%
SQS/FDFT1
9
0.2%
SQE
8
0.18%
AACT
8
0.18%
XMT_MXMT_DXMT
7
0.16%
CYP719
7
0.16%
DWF7
7
0.16%
SMO1/SMO2
6
0.14%
HMGR
6
0.14%
FLS
5
0.11%
CCoAOMT
5
0.11%
DXS
5
0.11%
GGPPS
5
0.11%
MVK
5
0.11%
ISY
4
0.09%
DFR
4
0.09%
CHI
4
0.09%
HYD1
4
0.09%
FK
4
0.09%
DXR
4
0.09%
TDC
3
0.07%
CYP80B1
3
0.07%
DWF1
3
0.07%
DET2
3
0.07%
PMK
3
0.07%
MVD
3
0.07%
ADC
2
0.05%
IDI
2
0.05%
GPPS
2
0.05%
HMGS
2
0.05%
HDR/IspH
2
0.05%
6OMT_4OMT_SOMT
1
0.02%
CPI1
1
0.02%
DWF5
1
0.02%
HDS/IspG
1
0.02%
MDS/IspF
1
0.02%
CMK/IspE
1
0.02%
MCT/IspD
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 533 | 18 | BAHD (209) | View species results |
| Alkaloid pathway | 408 | 22 | 7DLGT (78) | View species results |
| Phenylpropanoid pathway | 369 | 11 | POD (160) | View species results |
| Flavonoid pathway | 250 | 11 | UFGT (172) | View species results |
| Rosmarinic acid pathway | 161 | 7 | C4H (57) | View species results |
| Steroid pathway | 89 | 12 | CAS (37) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1595 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 406 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| silene_latifolia_GWHPCBIJ003478 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ003488 | Alkaloid | H6H | high | pass |
| silene_latifolia_GWHPCBIJ003496 | Alkaloid | H6H | high | pass |
| silene_latifolia_GWHPCBIJ004232 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ004418 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ005060 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ005601 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ005890 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ005940 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ005941 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ005942 | Alkaloid | H6H | medium | pass |
| silene_latifolia_GWHPCBIJ005944 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ005945 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ006449 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ006504 | Alkaloid | H6H | medium | pass |
| silene_latifolia_GWHPCBIJ006505 | Alkaloid | H6H | medium | pass |
| silene_latifolia_GWHPCBIJ006510 | Alkaloid | H6H | medium | pass |
| silene_latifolia_GWHPCBIJ006511 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ006640 | Alkaloid | H6H | medium | pass |
| silene_latifolia_GWHPCBIJ006641 | Alkaloid | H6H | high | pass |
| silene_latifolia_GWHPCBIJ006644 | Alkaloid | H6H | medium | pass |
| silene_latifolia_GWHPCBIJ006654 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ007007 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ007008 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ007030 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ007191 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ007862 | Alkaloid | H6H | high | pass |
| silene_latifolia_GWHPCBIJ009093 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ011556 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ011558 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ011561 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ011562 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ013591 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ013597 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ014228 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ017417 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ018084 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ018086 | Alkaloid | H6H | high | pass |
| silene_latifolia_GWHPCBIJ018523 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ021140 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ021456 | Alkaloid | H6H | medium | pass |
| silene_latifolia_GWHPCBIJ021708 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ023965 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ024404 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ024470 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ025301 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ025675 | Alkaloid | H6H | low | borderline |
| silene_latifolia_GWHPCBIJ027410 | Alkaloid | H6H | medium | pass |
| silene_latifolia_GWHPCBIJ027631 | Alkaloid | H6H | medium | borderline |
| silene_latifolia_GWHPCBIJ027828 | Alkaloid | H6H | medium | borderline |