PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
Reset
Protein/Isoform Record Pathway Family Confidence Status Best Target
Tcac01G0006200.1 Phenylpropanoid CAD medium pass CAD__00014__sp_Q2KNL5_CADH1_OCIBA
Tcac01G0006210.1 Phenylpropanoid CAD medium pass CAD__00007__sp_O24562_CADH_MAIZE
Tcac01G0008330.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac01G0008340.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac01G0008350.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac01G0008350.2 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac01G0008360.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac01G0008370.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac01G0008380.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac01G0008390.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac01G0008400.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac01G0008410.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac01G0008420.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac01G0008430.1 Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac01G0011490.1 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Tcac01G0011490.2 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Tcac01G0011560.1 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
Tcac01G0011560.2 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
Tcac01G0012370.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Tcac01G0012390.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Tcac01G0020540.1 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Tcac01G0020550.1 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Tcac01G0021680.1 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
Tcac01G0021680.2 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
Tcac01G0022190.1 Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac01G0022190.2 Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac01G0025500.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Tcac01G0035170.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Tcac01G0038040.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Tcac01G0038050.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Tcac02G0010460.1 Phenylpropanoid CAD medium pass CAD__00001__sp_A0A072VPZ8_CAD1_MEDTR
Tcac02G0010470.1 Phenylpropanoid CAD medium pass CAD__00014__sp_Q2KNL5_CADH1_OCIBA
Tcac02G0014510.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Tcac02G0015880.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Tcac02G0015890.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Tcac02G0015890.2 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Tcac02G0022880.1 Phenylpropanoid CAD low borderline CAD__00008__sp_O49482_CADH5_ARATH
Tcac03G0019310.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac03G0019310.2 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac03G0019310.3 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac03G0019330.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Tcac03G0019740.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Tcac03G0020370.1 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Tcac03G0025870.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Tcac03G0025880.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Tcac03G0026990.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Tcac04G0000860.1 Phenylpropanoid CAD low borderline CAD__00008__sp_O49482_CADH5_ARATH
Tcac04G0000870.1 Phenylpropanoid CAD low borderline CAD__00008__sp_O49482_CADH5_ARATH
Tcac04G0000880.1 Phenylpropanoid CAD low borderline CAD__00010__sp_P48523_CADH4_ARATH
Tcac04G0009080.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR