PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Tcac03G0001200.1 Terpenoid DXR high pass
Tcac03G0005090.1 Terpenoid DXR low borderline
Tcac03G0005090.2 Terpenoid DXR low borderline
Tcac01G0008510.1 Terpenoid DXS medium pass
Tcac01G0008520.1 Terpenoid DXS medium pass
Tcac04G0025210.1 Terpenoid DXS medium pass
Tcac04G0025210.2 Terpenoid DXS medium pass
Tcac09G0014430.1 Terpenoid DXS medium pass
Tcac09G0014430.2 Terpenoid DXS medium pass
Tcac09G0014430.3 Terpenoid DXS medium pass
Tcac09G0014430.4 Terpenoid DXS medium pass
Tcac09G0014430.5 Terpenoid DXS medium pass
Tcac09G0014430.6 Terpenoid DXS medium pass
Tcac09G0014430.7 Terpenoid DXS medium pass
Tcac09G0015970.1 Terpenoid DXS medium pass
Tcac01G0000600.1 Terpenoid FPPS low borderline
Tcac02G0013150.1 Terpenoid FPPS low borderline
Tcac02G0014020.1 Terpenoid FPPS medium pass
Tcac02G0014030.1 Terpenoid FPPS medium pass
Tcac02G0014040.1 Terpenoid FPPS medium pass
Tcac02G0014050.1 Terpenoid FPPS medium pass
Tcac02G0014050.2 Terpenoid FPPS medium pass
Tcac05G0001640.1 Terpenoid FPPS medium pass
Tcac06G0022280.1 Terpenoid FPPS medium pass
Tcac07G0000800.1 Terpenoid FPPS medium pass
Tcac07G0000800.2 Terpenoid FPPS medium pass
Tcac07G0000800.3 Terpenoid FPPS medium pass
Tcac07G0003420.1 Terpenoid FPPS medium borderline
Tcac09G0027960.1 Terpenoid FPPS medium pass
Tcac01G0004060.1 Terpenoid GGPPS medium borderline
Tcac02G0005150.1 Terpenoid GGPPS medium borderline
Tcac04G0010100.1 Terpenoid GGPPS medium borderline
Tcac04G0010110.1 Terpenoid GGPPS medium borderline
Tcac04G0010130.1 Terpenoid GGPPS medium borderline
Tcac06G0012790.1 Terpenoid GGPPS medium borderline
Tcac06G0012790.2 Terpenoid GGPPS medium borderline
Tcac06G0012790.3 Terpenoid GGPPS medium borderline
Tcac06G0012790.4 Terpenoid GGPPS medium borderline
Tcac06G0012790.5 Terpenoid GGPPS medium borderline
Tcac06G0012800.1 Terpenoid GGPPS medium borderline
Tcac07G0013550.1 Terpenoid GGPPS medium borderline
Tcac09G0027330.1 Terpenoid GGPPS medium borderline
Tcac02G0011770.1 Terpenoid HDR/IspH high pass
Tcac09G0031590.1 Terpenoid HDS/IspG high pass
Tcac09G0031590.2 Terpenoid HDS/IspG high pass
Tcac01G0000190.1 Terpenoid HMGR medium pass
Tcac01G0000190.2 Terpenoid HMGR medium pass
Tcac02G0014380.1 Terpenoid HMGR medium pass
Tcac08G0009500.1 Terpenoid HMGR medium pass
Tcac03G0014760.1 Terpenoid HMGS high pass