PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Tcac03G0014760.2 Terpenoid HMGS high pass
Tcac03G0024610.1 Terpenoid HMGS high pass
Tcac05G0017100.1 Terpenoid IDI medium pass
Tcac02G0000580.1 Terpenoid MCT/IspD low borderline
Tcac06G0005710.1 Terpenoid MCT/IspD high pass
Tcac03G0026230.1 Terpenoid MDS/IspF high pass
Tcac06G0021620.1 Terpenoid MVD low borderline
Tcac10G0009910.1 Terpenoid MVD medium pass
Tcac10G0010470.1 Terpenoid MVD low borderline
Tcac02G0014190.1 Terpenoid MVK low borderline
Tcac02G0014190.2 Terpenoid MVK low borderline
Tcac02G0016770.1 Terpenoid MVK low borderline
Tcac02G0016770.2 Terpenoid MVK low borderline
Tcac04G0028110.1 Terpenoid MVK low borderline
Tcac05G0027580.1 Terpenoid MVK medium pass
Tcac03G0028640.1 Terpenoid PMK medium pass
Tcac01G0011560.1 Terpenoid TPS medium pass
Tcac01G0011560.2 Terpenoid TPS medium pass
Tcac01G0025500.1 Terpenoid TPS medium pass
Tcac02G0015880.1 Terpenoid TPS medium pass
Tcac02G0015890.1 Terpenoid TPS medium pass
Tcac02G0015890.2 Terpenoid TPS medium pass
Tcac03G0025870.1 Terpenoid TPS medium pass
Tcac03G0025880.1 Terpenoid TPS medium pass
Tcac05G0010760.1 Terpenoid TPS medium pass
Tcac05G0010760.2 Terpenoid TPS medium pass
Tcac05G0010760.3 Terpenoid TPS medium pass
Tcac05G0010760.4 Terpenoid TPS medium pass
Tcac06G0017540.1 Terpenoid TPS medium pass
Tcac06G0017550.1 Terpenoid TPS medium pass
Tcac06G0017550.2 Terpenoid TPS medium pass
Tcac06G0017560.1 Terpenoid TPS medium pass
Tcac06G0017570.1 Terpenoid TPS low borderline
Tcac06G0018800.1 Terpenoid TPS medium pass
Tcac06G0018810.1 Terpenoid TPS medium pass
Tcac06G0018820.1 Terpenoid TPS medium pass
Tcac06G0018830.1 Terpenoid TPS medium pass
Tcac06G0018830.2 Terpenoid TPS medium pass
Tcac06G0018830.3 Terpenoid TPS medium pass
Tcac06G0018840.1 Terpenoid TPS medium pass
Tcac06G0018850.1 Terpenoid TPS medium pass
Tcac06G0018890.1 Terpenoid TPS medium pass
Tcac07G0005250.1 Terpenoid TPS medium pass
Tcac07G0005260.1 Terpenoid TPS medium pass
Tcac07G0005270.1 Terpenoid TPS medium pass
Tcac07G0005490.1 Terpenoid TPS medium pass
Tcac07G0005500.1 Terpenoid TPS medium pass
Tcac07G0005520.1 Terpenoid TPS medium pass
Tcac07G0005530.1 Terpenoid TPS medium pass
Tcac07G0005540.1 Terpenoid TPS medium pass