PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Tcac06G0014540.2 Phenylpropanoid HCT low borderline
Tcac06G0014540.3 Phenylpropanoid HCT low borderline
Tcac06G0014540.4 Phenylpropanoid HCT low borderline
Tcac06G0014540.5 Phenylpropanoid HCT low borderline
Tcac08G0003130.1 Phenylpropanoid HCT low borderline
Tcac08G0005590.1 Phenylpropanoid HCT low borderline
Tcac09G0002690.1 Phenylpropanoid HCT medium pass
Tcac09G0002690.2 Phenylpropanoid HCT medium pass
Tcac09G0002690.3 Phenylpropanoid HCT medium pass
Tcac09G0002690.4 Phenylpropanoid HCT medium pass
Tcac09G0002690.5 Phenylpropanoid HCT medium pass
Tcac09G0002700.1 Phenylpropanoid HCT medium pass
Tcac09G0002710.1 Phenylpropanoid HCT medium pass
Tcac09G0002730.1 Phenylpropanoid HCT medium pass
Tcac09G0002740.1 Phenylpropanoid HCT medium pass
Tcac09G0002750.1 Phenylpropanoid HCT medium pass
Tcac09G0033510.1 Phenylpropanoid HCT low borderline
Tcac09G0033520.1 Phenylpropanoid HCT low borderline
Tcac10G0001290.1 Phenylpropanoid HCT medium pass
Tcac10G0001290.2 Phenylpropanoid HCT medium pass
Tcac10G0002500.1 Phenylpropanoid HCT low borderline
Tcac10G0002510.1 Phenylpropanoid HCT low borderline
Tcac01G0003230.1 Phenylpropanoid LAC medium pass
Tcac01G0003820.1 Phenylpropanoid LAC medium pass
Tcac01G0004870.1 Phenylpropanoid LAC low borderline
Tcac01G0004870.2 Phenylpropanoid LAC low borderline
Tcac01G0010230.1 Phenylpropanoid LAC medium pass
Tcac01G0010250.1 Phenylpropanoid LAC low borderline
Tcac01G0010280.1 Phenylpropanoid LAC medium pass
Tcac01G0018590.1 Phenylpropanoid LAC medium pass
Tcac01G0018590.2 Phenylpropanoid LAC medium pass
Tcac01G0018600.1 Phenylpropanoid LAC medium pass
Tcac01G0018620.1 Phenylpropanoid LAC medium pass
Tcac01G0018630.1 Phenylpropanoid LAC medium pass
Tcac01G0031490.1 Phenylpropanoid LAC medium pass
Tcac02G0008090.1 Phenylpropanoid LAC medium pass
Tcac02G0013870.1 Phenylpropanoid LAC medium pass
Tcac03G0004880.1 Phenylpropanoid LAC medium pass
Tcac05G0002070.1 Phenylpropanoid LAC medium pass
Tcac05G0002490.1 Phenylpropanoid LAC medium pass
Tcac05G0002490.2 Phenylpropanoid LAC medium pass
Tcac05G0002500.1 Phenylpropanoid LAC medium pass
Tcac05G0003550.1 Phenylpropanoid LAC medium pass
Tcac05G0003560.1 Phenylpropanoid LAC medium pass
Tcac05G0003570.1 Phenylpropanoid LAC medium pass
Tcac05G0003600.1 Phenylpropanoid LAC medium pass
Tcac05G0005970.1 Phenylpropanoid LAC medium pass
Tcac05G0005980.1 Phenylpropanoid LAC medium pass
Tcac05G0007110.1 Phenylpropanoid LAC medium pass
Tcac07G0016110.1 Phenylpropanoid LAC medium pass