PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
Tcac08G0004340.1 Phenylpropanoid LAC low borderline
Tcac08G0018360.1 Phenylpropanoid LAC medium pass
Tcac08G0018370.1 Phenylpropanoid LAC medium pass
Tcac08G0018370.2 Phenylpropanoid LAC medium pass
Tcac08G0018390.1 Phenylpropanoid LAC medium pass
Tcac09G0019200.1 Phenylpropanoid LAC low borderline
Tcac09G0019220.1 Phenylpropanoid LAC low borderline
Tcac09G0028330.1 Phenylpropanoid LAC medium pass
Tcac09G0029480.1 Phenylpropanoid LAC medium pass
Tcac09G0030790.1 Phenylpropanoid LAC medium pass
Tcac09G0030940.1 Phenylpropanoid LAC medium pass
Tcac09G0030960.1 Phenylpropanoid LAC low borderline
Tcac09G0031400.1 Phenylpropanoid LAC medium pass
Tcac09G0031410.1 Phenylpropanoid LAC medium pass
Tcac09G0033300.1 Phenylpropanoid LAC medium pass
Tcac10G0000920.1 Phenylpropanoid LAC medium pass
Tcac10G0002620.1 Phenylpropanoid LAC medium pass
Tcac02G0023980.1 Phenylpropanoid PAL low borderline
Tcac05G0006080.1 Phenylpropanoid PAL high pass
Tcac05G0006080.2 Phenylpropanoid PAL high pass
Tcac09G0008990.1 Phenylpropanoid PAL low borderline
Tcac09G0031950.1 Phenylpropanoid PAL high pass
Tcac09G0031950.2 Phenylpropanoid PAL high pass
Tcac10G0007430.1 Phenylpropanoid PAL high pass
Tcac01G0001250.1 Phenylpropanoid POD medium pass
Tcac01G0001480.1 Phenylpropanoid POD medium pass
Tcac01G0002630.1 Phenylpropanoid POD medium pass
Tcac01G0005010.1 Phenylpropanoid POD medium pass
Tcac01G0006750.1 Phenylpropanoid POD medium pass
Tcac01G0009020.1 Phenylpropanoid POD medium pass
Tcac01G0009020.10 Phenylpropanoid POD medium pass
Tcac01G0009020.11 Phenylpropanoid POD medium pass
Tcac01G0009020.12 Phenylpropanoid POD medium pass
Tcac01G0009020.2 Phenylpropanoid POD medium pass
Tcac01G0009020.3 Phenylpropanoid POD medium pass
Tcac01G0009020.4 Phenylpropanoid POD medium pass
Tcac01G0009020.5 Phenylpropanoid POD medium pass
Tcac01G0009020.6 Phenylpropanoid POD medium pass
Tcac01G0009020.7 Phenylpropanoid POD medium pass
Tcac01G0009020.8 Phenylpropanoid POD medium pass
Tcac01G0009020.9 Phenylpropanoid POD medium pass
Tcac01G0009040.1 Phenylpropanoid POD medium pass
Tcac01G0009280.1 Phenylpropanoid POD medium pass
Tcac01G0014120.1 Phenylpropanoid POD medium pass
Tcac01G0014770.1 Phenylpropanoid POD medium pass
Tcac01G0017590.1 Phenylpropanoid POD medium pass
Tcac01G0017590.2 Phenylpropanoid POD medium pass
Tcac01G0021200.1 Phenylpropanoid POD medium pass
Tcac01G0021200.2 Phenylpropanoid POD medium pass
Tcac01G0021200.3 Phenylpropanoid POD medium pass