PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Tcac01G0017200.1 Alkaloid 7DLGT low borderline
Tcac01G0019650.1 Alkaloid 7DLGT medium pass
Tcac01G0019660.1 Alkaloid 7DLGT medium pass
Tcac01G0019680.1 Alkaloid 7DLGT low borderline
Tcac01G0019720.1 Alkaloid 7DLGT low borderline
Tcac01G0032070.1 Alkaloid 7DLGT low borderline
Tcac01G0032080.1 Alkaloid 7DLGT high pass
Tcac01G0032960.1 Alkaloid 7DLGT low borderline
Tcac01G0032980.1 Alkaloid 7DLGT low borderline
Tcac02G0000370.1 Alkaloid 7DLGT medium pass
Tcac02G0000380.1 Alkaloid 7DLGT low borderline
Tcac02G0002940.1 Alkaloid 7DLGT medium pass
Tcac02G0002950.1 Alkaloid 7DLGT medium pass
Tcac02G0002960.1 Alkaloid 7DLGT medium pass
Tcac02G0002970.1 Alkaloid 7DLGT medium pass
Tcac02G0005240.1 Alkaloid 7DLGT low borderline
Tcac02G0010070.1 Alkaloid 7DLGT low borderline
Tcac02G0010080.1 Alkaloid 7DLGT low borderline
Tcac02G0010090.1 Alkaloid 7DLGT medium pass
Tcac02G0010100.1 Alkaloid 7DLGT low borderline
Tcac02G0010110.1 Alkaloid 7DLGT medium pass
Tcac02G0010170.1 Alkaloid 7DLGT medium pass
Tcac02G0010180.1 Alkaloid 7DLGT medium pass
Tcac02G0010190.1 Alkaloid 7DLGT medium pass
Tcac02G0010520.1 Alkaloid 7DLGT low borderline
Tcac02G0010530.1 Alkaloid 7DLGT low borderline
Tcac02G0012330.1 Alkaloid 7DLGT low borderline
Tcac02G0013110.1 Alkaloid 7DLGT medium pass
Tcac02G0013110.2 Alkaloid 7DLGT medium pass
Tcac02G0013120.1 Alkaloid 7DLGT high pass
Tcac02G0013130.1 Alkaloid 7DLGT medium pass
Tcac02G0013360.1 Alkaloid 7DLGT high pass
Tcac02G0013390.1 Alkaloid 7DLGT high pass
Tcac02G0022230.1 Alkaloid 7DLGT medium pass
Tcac02G0028160.1 Alkaloid 7DLGT low borderline
Tcac02G0028160.2 Alkaloid 7DLGT medium pass
Tcac02G0029360.1 Alkaloid 7DLGT low borderline
Tcac02G0029400.1 Alkaloid 7DLGT medium pass
Tcac02G0030800.1 Alkaloid 7DLGT medium pass
Tcac02G0030810.1 Alkaloid 7DLGT low borderline
Tcac02G0030820.1 Alkaloid 7DLGT low borderline
Tcac02G0030830.1 Alkaloid 7DLGT low borderline
Tcac02G0033140.1 Alkaloid 7DLGT medium pass
Tcac03G0000530.1 Alkaloid 7DLGT medium pass
Tcac03G0008280.1 Alkaloid 7DLGT medium pass
Tcac03G0008310.1 Alkaloid 7DLGT medium pass
Tcac03G0008320.1 Alkaloid 7DLGT medium pass
Tcac03G0008340.1 Alkaloid 7DLGT medium pass
Tcac03G0009260.1 Alkaloid 7DLGT low borderline
Tcac03G0016610.1 Alkaloid 7DLGT medium pass