PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Family-Level Assignments
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Family-Level Assignments Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Family-level assignments Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Tcac03G0016620.1 Alkaloid 7DLGT medium pass
Tcac03G0026950.1 Alkaloid 7DLGT medium pass
Tcac03G0026960.1 Alkaloid 7DLGT medium pass
Tcac03G0026970.1 Alkaloid 7DLGT medium pass
Tcac03G0028990.1 Alkaloid 7DLGT low borderline
Tcac03G0029000.1 Alkaloid 7DLGT low borderline
Tcac04G0007720.1 Alkaloid 7DLGT medium pass
Tcac04G0007730.1 Alkaloid 7DLGT low borderline
Tcac04G0008070.1 Alkaloid 7DLGT medium pass
Tcac04G0008080.1 Alkaloid 7DLGT medium pass
Tcac04G0008090.1 Alkaloid 7DLGT medium pass
Tcac04G0008100.1 Alkaloid 7DLGT high pass
Tcac04G0014060.1 Alkaloid 7DLGT medium pass
Tcac04G0014080.1 Alkaloid 7DLGT medium pass
Tcac04G0014080.2 Alkaloid 7DLGT low borderline
Tcac04G0014110.1 Alkaloid 7DLGT medium pass
Tcac04G0014110.2 Alkaloid 7DLGT medium pass
Tcac04G0014120.1 Alkaloid 7DLGT low borderline
Tcac04G0014120.2 Alkaloid 7DLGT medium pass
Tcac04G0014140.1 Alkaloid 7DLGT low borderline
Tcac04G0015860.1 Alkaloid 7DLGT low borderline
Tcac04G0015890.1 Alkaloid 7DLGT low borderline
Tcac04G0015900.1 Alkaloid 7DLGT low borderline
Tcac04G0016130.1 Alkaloid 7DLGT low borderline
Tcac04G0016130.2 Alkaloid 7DLGT low borderline
Tcac04G0017330.1 Alkaloid 7DLGT low borderline
Tcac04G0017340.1 Alkaloid 7DLGT low borderline
Tcac04G0017350.1 Alkaloid 7DLGT low borderline
Tcac04G0017350.2 Alkaloid 7DLGT low borderline
Tcac05G0002600.1 Alkaloid 7DLGT medium pass
Tcac05G0002610.1 Alkaloid 7DLGT medium pass
Tcac05G0002610.2 Alkaloid 7DLGT medium pass
Tcac05G0002620.1 Alkaloid 7DLGT high pass
Tcac05G0002630.1 Alkaloid 7DLGT medium pass
Tcac05G0006320.1 Alkaloid 7DLGT low borderline
Tcac05G0007120.1 Alkaloid 7DLGT medium pass
Tcac05G0007150.1 Alkaloid 7DLGT medium pass
Tcac05G0007160.1 Alkaloid 7DLGT medium pass
Tcac05G0007170.1 Alkaloid 7DLGT medium pass
Tcac05G0007180.1 Alkaloid 7DLGT low borderline
Tcac05G0007190.1 Alkaloid 7DLGT low borderline
Tcac05G0013170.1 Alkaloid 7DLGT low borderline
Tcac05G0013170.2 Alkaloid 7DLGT low borderline
Tcac05G0013180.1 Alkaloid 7DLGT low borderline
Tcac05G0013190.1 Alkaloid 7DLGT low borderline
Tcac05G0016990.1 Alkaloid 7DLGT low borderline
Tcac05G0016990.2 Alkaloid 7DLGT low borderline
Tcac05G0017000.1 Alkaloid 7DLGT low borderline
Tcac05G0017000.2 Alkaloid 7DLGT low borderline
Tcac05G0017770.1 Alkaloid 7DLGT medium pass