PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Tcac05G0018620.1 Alkaloid 7DLGT low borderline
Tcac05G0018620.2 Alkaloid 7DLGT low borderline
Tcac05G0018630.1 Alkaloid 7DLGT low borderline
Tcac05G0018730.1 Alkaloid 7DLGT medium pass
Tcac05G0018740.1 Alkaloid 7DLGT medium pass
Tcac05G0018760.1 Alkaloid 7DLGT medium pass
Tcac06G0016080.1 Alkaloid 7DLGT low borderline
Tcac06G0016090.1 Alkaloid 7DLGT low borderline
Tcac06G0019610.1 Alkaloid 7DLGT low borderline
Tcac07G0009680.1 Alkaloid 7DLGT low borderline
Tcac07G0009850.1 Alkaloid 7DLGT low borderline
Tcac07G0009870.1 Alkaloid 7DLGT low borderline
Tcac07G0009880.1 Alkaloid 7DLGT low borderline
Tcac08G0000260.1 Alkaloid 7DLGT low borderline
Tcac08G0006970.1 Alkaloid 7DLGT low borderline
Tcac08G0010060.1 Alkaloid 7DLGT medium pass
Tcac08G0014660.1 Alkaloid 7DLGT medium pass
Tcac08G0017690.1 Alkaloid 7DLGT low borderline
Tcac08G0017700.1 Alkaloid 7DLGT low borderline
Tcac08G0017710.1 Alkaloid 7DLGT low borderline
Tcac09G0008260.1 Alkaloid 7DLGT low borderline
Tcac09G0008280.1 Alkaloid 7DLGT low borderline
Tcac09G0008290.1 Alkaloid 7DLGT low borderline
Tcac09G0008300.1 Alkaloid 7DLGT low borderline
Tcac09G0008320.1 Alkaloid 7DLGT low borderline
Tcac09G0015690.1 Alkaloid 7DLGT low borderline
Tcac09G0016120.1 Alkaloid 7DLGT low borderline
Tcac09G0018100.1 Alkaloid 7DLGT high pass
Tcac09G0020670.1 Alkaloid 7DLGT low borderline
Tcac09G0020670.2 Alkaloid 7DLGT low borderline
Tcac09G0020670.3 Alkaloid 7DLGT low borderline
Tcac09G0028040.1 Alkaloid 7DLGT medium pass
Tcac09G0028050.1 Alkaloid 7DLGT medium pass
Tcac09G0028060.1 Alkaloid 7DLGT medium pass
Tcac09G0028720.1 Alkaloid 7DLGT high pass
Tcac09G0028810.1 Alkaloid 7DLGT high pass
Tcac09G0028830.1 Alkaloid 7DLGT high pass
Tcac09G0028990.1 Alkaloid 7DLGT medium pass
Tcac09G0032370.1 Alkaloid 7DLGT low borderline
Tcac09G0033160.1 Alkaloid 7DLGT low borderline
Tcac09G0033170.1 Alkaloid 7DLGT medium pass
Tcac09G0033180.1 Alkaloid 7DLGT medium pass
Tcac09G0033190.1 Alkaloid 7DLGT low borderline
Tcac09G0033190.2 Alkaloid 7DLGT medium pass
Tcac09G0033200.1 Alkaloid 7DLGT low borderline
Tcac09G0033210.1 Alkaloid 7DLGT low borderline
Tcac10G0002860.1 Alkaloid 7DLGT high pass
Tcac10G0002870.1 Alkaloid 7DLGT high pass
Tcac10G0002880.1 Alkaloid 7DLGT medium pass
Tcac10G0002900.1 Alkaloid 7DLGT high pass