PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Tcac10G0002910.1 Alkaloid 7DLGT medium pass
Tcac10G0002920.1 Alkaloid 7DLGT high pass
Tcac10G0002930.1 Alkaloid 7DLGT medium pass
Tcac10G0002940.1 Alkaloid 7DLGT high pass
Tcac10G0002960.1 Alkaloid 7DLGT high pass
Tcac10G0002970.1 Alkaloid 7DLGT high pass
Tcac10G0015170.1 Alkaloid 7DLGT low borderline
Tcac10G0015210.1 Alkaloid 7DLGT low borderline
TcacsCAffold_180000330.1 Alkaloid 7DLGT low borderline
Tcac01G0024600.1 Alkaloid 7DLH low borderline
Tcac01G0037440.1 Alkaloid 7DLH medium borderline
Tcac02G0029650.1 Alkaloid 7DLH medium borderline
Tcac02G0029660.1 Alkaloid 7DLH medium borderline
Tcac02G0029690.1 Alkaloid 7DLH medium borderline
Tcac02G0029700.1 Alkaloid 7DLH medium borderline
Tcac02G0029710.1 Alkaloid 7DLH medium borderline
Tcac02G0029720.2 Alkaloid 7DLH medium borderline
Tcac03G0015820.1 Alkaloid 7DLH medium borderline
Tcac03G0025750.1 Alkaloid 7DLH medium borderline
Tcac04G0011790.1 Alkaloid 7DLH medium borderline
Tcac04G0018390.1 Alkaloid 7DLH medium borderline
Tcac04G0018400.1 Alkaloid 7DLH medium borderline
Tcac04G0022780.1 Alkaloid 7DLH medium borderline
Tcac04G0022780.2 Alkaloid 7DLH medium borderline
Tcac05G0007250.1 Alkaloid 7DLH medium borderline
Tcac07G0013590.1 Alkaloid 7DLH medium borderline
Tcac08G0002240.1 Alkaloid 7DLH low borderline
Tcac09G0000850.1 Alkaloid 7DLH medium borderline
Tcac09G0007790.1 Alkaloid 7DLH medium borderline
Tcac09G0023110.1 Alkaloid 7DLH low borderline
Tcac09G0028200.1 Alkaloid 7DLH medium borderline
Tcac09G0034140.1 Alkaloid 7DLH medium borderline
Tcac10G0017160.1 Alkaloid 7DLH medium pass
Tcac10G0017170.1 Alkaloid 7DLH medium borderline
Tcac10G0017170.2 Alkaloid 7DLH medium borderline
Tcac10G0017170.3 Alkaloid 7DLH medium borderline
Tcac10G0017170.4 Alkaloid 7DLH low borderline
TcacsCAffold_540000440.1 Alkaloid 7DLH medium borderline
TcacsCAffold_540000450.1 Alkaloid 7DLH medium borderline
Tcac01G0012370.1 Alkaloid 8HGO medium borderline
Tcac01G0012370.2 Alkaloid 8HGO medium pass
Tcac01G0012390.1 Alkaloid 8HGO medium borderline
Tcac01G0021680.1 Alkaloid 8HGO medium borderline
Tcac01G0021680.2 Alkaloid 8HGO medium borderline
Tcac01G0022830.1 Alkaloid 8HGO medium borderline
Tcac03G0019740.1 Alkaloid 8HGO medium borderline
Tcac05G0017320.1 Alkaloid 8HGO medium borderline
Tcac05G0019600.1 Alkaloid 8HGO medium borderline
Tcac05G0019600.2 Alkaloid 8HGO medium borderline
Tcac05G0019600.3 Alkaloid 8HGO medium borderline