PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Tcac09G0016440.1 Rosmarinic Acid 4CL medium pass
Tcac09G0032460.1 Rosmarinic Acid 4CL medium pass
Tcac10G0008640.1 Rosmarinic Acid 4CL medium pass
Tcac01G0002290.1 Rosmarinic Acid C4H low borderline
Tcac01G0002320.1 Rosmarinic Acid C4H medium pass
Tcac01G0002550.1 Rosmarinic Acid C4H low borderline
Tcac01G0003590.1 Rosmarinic Acid C4H low borderline
Tcac01G0004540.1 Rosmarinic Acid C4H low borderline
Tcac01G0004550.1 Rosmarinic Acid C4H low borderline
Tcac01G0006330.1 Rosmarinic Acid C4H low borderline
Tcac01G0006340.1 Rosmarinic Acid C4H low borderline
Tcac01G0006350.1 Rosmarinic Acid C4H low borderline
Tcac01G0006360.1 Rosmarinic Acid C4H low borderline
Tcac01G0006370.1 Rosmarinic Acid C4H low borderline
Tcac01G0006380.1 Rosmarinic Acid C4H medium pass
Tcac01G0006380.2 Rosmarinic Acid C4H medium pass
Tcac01G0006380.3 Rosmarinic Acid C4H medium pass
Tcac01G0006380.4 Rosmarinic Acid C4H medium pass
Tcac01G0009540.1 Rosmarinic Acid C4H low borderline
Tcac01G0009540.2 Rosmarinic Acid C4H low borderline
Tcac01G0010630.1 Rosmarinic Acid C4H medium pass
Tcac01G0010840.1 Rosmarinic Acid C4H low borderline
Tcac01G0014980.1 Rosmarinic Acid C4H low borderline
Tcac01G0016660.1 Rosmarinic Acid C4H low borderline
Tcac01G0018470.1 Rosmarinic Acid C4H medium pass
Tcac01G0018470.2 Rosmarinic Acid C4H low borderline
Tcac01G0019180.1 Rosmarinic Acid C4H low borderline
Tcac01G0020700.1 Rosmarinic Acid C4H low borderline
Tcac01G0020720.1 Rosmarinic Acid C4H medium pass
Tcac01G0020730.1 Rosmarinic Acid C4H low borderline
Tcac01G0031200.1 Rosmarinic Acid C4H low borderline
Tcac01G0031630.1 Rosmarinic Acid C4H low borderline
Tcac01G0034750.1 Rosmarinic Acid C4H low borderline
Tcac01G0034760.1 Rosmarinic Acid C4H low borderline
Tcac01G0034760.2 Rosmarinic Acid C4H low borderline
Tcac01G0034770.1 Rosmarinic Acid C4H low borderline
Tcac01G0034770.2 Rosmarinic Acid C4H low borderline
Tcac01G0034770.3 Rosmarinic Acid C4H low borderline
Tcac01G0034780.1 Rosmarinic Acid C4H low borderline
Tcac01G0037430.1 Rosmarinic Acid C4H low borderline
Tcac01G0037440.1 Rosmarinic Acid C4H low borderline
Tcac02G0001770.1 Rosmarinic Acid C4H low borderline
Tcac02G0002710.1 Rosmarinic Acid C4H medium pass
Tcac02G0002720.1 Rosmarinic Acid C4H low borderline
Tcac02G0007390.1 Rosmarinic Acid C4H medium pass
Tcac02G0009340.1 Rosmarinic Acid C4H low borderline
Tcac02G0009360.1 Rosmarinic Acid C4H low borderline
Tcac02G0009390.1 Rosmarinic Acid C4H low borderline
Tcac02G0015860.1 Rosmarinic Acid C4H low borderline
Tcac02G0017870.1 Rosmarinic Acid C4H low borderline