PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Tcac02G0019820.1 Rosmarinic Acid C4H low borderline
Tcac02G0024120.1 Rosmarinic Acid C4H low borderline
Tcac02G0024130.1 Rosmarinic Acid C4H low borderline
Tcac02G0024140.1 Rosmarinic Acid C4H low borderline
Tcac02G0024150.1 Rosmarinic Acid C4H medium pass
Tcac02G0024260.1 Rosmarinic Acid C4H low borderline
Tcac02G0024700.1 Rosmarinic Acid C4H medium pass
Tcac02G0029650.1 Rosmarinic Acid C4H low borderline
Tcac02G0029660.1 Rosmarinic Acid C4H low borderline
Tcac02G0029680.1 Rosmarinic Acid C4H low borderline
Tcac02G0029680.2 Rosmarinic Acid C4H low borderline
Tcac02G0029690.1 Rosmarinic Acid C4H low borderline
Tcac02G0029700.1 Rosmarinic Acid C4H low borderline
Tcac02G0029710.1 Rosmarinic Acid C4H low borderline
Tcac02G0029720.1 Rosmarinic Acid C4H low borderline
Tcac02G0029720.2 Rosmarinic Acid C4H low borderline
Tcac02G0030080.1 Rosmarinic Acid C4H medium pass
Tcac02G0031460.1 Rosmarinic Acid C4H low borderline
Tcac03G0003010.1 Rosmarinic Acid C4H low borderline
Tcac03G0003020.1 Rosmarinic Acid C4H medium pass
Tcac03G0003050.1 Rosmarinic Acid C4H medium pass
Tcac03G0003070.1 Rosmarinic Acid C4H medium pass
Tcac03G0003080.1 Rosmarinic Acid C4H low borderline
Tcac03G0003100.1 Rosmarinic Acid C4H medium pass
Tcac03G0003110.1 Rosmarinic Acid C4H low borderline
Tcac03G0003120.1 Rosmarinic Acid C4H medium pass
Tcac03G0006220.1 Rosmarinic Acid C4H low borderline
Tcac03G0006220.2 Rosmarinic Acid C4H low borderline
Tcac03G0006220.3 Rosmarinic Acid C4H low borderline
Tcac03G0006220.4 Rosmarinic Acid C4H low borderline
Tcac03G0006220.5 Rosmarinic Acid C4H low borderline
Tcac03G0008430.1 Rosmarinic Acid C4H low borderline
Tcac03G0009860.1 Rosmarinic Acid C4H medium pass
Tcac03G0009860.2 Rosmarinic Acid C4H medium pass
Tcac03G0009870.1 Rosmarinic Acid C4H medium pass
Tcac03G0009890.1 Rosmarinic Acid C4H low borderline
Tcac03G0009900.1 Rosmarinic Acid C4H medium pass
Tcac03G0009910.1 Rosmarinic Acid C4H medium pass
Tcac03G0009920.1 Rosmarinic Acid C4H medium pass
Tcac03G0009940.1 Rosmarinic Acid C4H low borderline
Tcac03G0013980.1 Rosmarinic Acid C4H low borderline
Tcac03G0014000.1 Rosmarinic Acid C4H low borderline
Tcac03G0014010.1 Rosmarinic Acid C4H low borderline
Tcac03G0014020.1 Rosmarinic Acid C4H low borderline
Tcac03G0014060.1 Rosmarinic Acid C4H medium pass
Tcac03G0014440.1 Rosmarinic Acid C4H low borderline
Tcac03G0015820.1 Rosmarinic Acid C4H low borderline
Tcac03G0019970.1 Rosmarinic Acid C4H low borderline
Tcac03G0020980.1 Rosmarinic Acid C4H low borderline
Tcac03G0020990.1 Rosmarinic Acid C4H low borderline