PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Tcac08G0003830.1 Alkaloid T3O medium borderline
Tcac08G0003860.1 Alkaloid T3O medium borderline
Tcac08G0003870.1 Alkaloid T3O medium borderline
Tcac08G0003890.1 Alkaloid T3O medium borderline
Tcac08G0003900.1 Alkaloid T3O medium borderline
Tcac08G0005680.1 Alkaloid T3O low borderline
Tcac08G0008900.1 Alkaloid T3O medium borderline
Tcac08G0008960.1 Alkaloid T3O medium borderline
Tcac08G0008970.1 Alkaloid T3O medium borderline
Tcac08G0009060.1 Alkaloid T3O medium borderline
Tcac08G0009080.1 Alkaloid T3O medium borderline
Tcac08G0009100.1 Alkaloid T3O medium borderline
Tcac08G0009110.1 Alkaloid T3O medium borderline
Tcac08G0014770.1 Alkaloid T3O medium pass
Tcac08G0014780.1 Alkaloid T3O medium pass
Tcac08G0015200.1 Alkaloid T3O low borderline
Tcac08G0017390.1 Alkaloid T3O medium borderline
Tcac08G0017960.1 Alkaloid T3O medium pass
Tcac08G0018350.1 Alkaloid T3O medium borderline
Tcac09G0000060.2 Alkaloid T3O medium pass
Tcac09G0007490.1 Alkaloid T3O medium borderline
Tcac09G0007490.2 Alkaloid T3O medium borderline
Tcac09G0019070.1 Alkaloid T3O medium pass
Tcac09G0020590.1 Alkaloid T3O medium borderline
Tcac09G0026460.1 Alkaloid T3O low borderline
Tcac09G0028760.1 Alkaloid T3O medium pass
Tcac09G0028770.1 Alkaloid T3O medium pass
Tcac09G0028770.2 Alkaloid T3O medium pass
Tcac09G0029540.1 Alkaloid T3O medium pass
Tcac09G0030250.1 Alkaloid T3O medium pass
Tcac10G0000010.1 Alkaloid T3O medium pass
Tcac10G0000010.2 Alkaloid T3O medium pass
Tcac10G0001970.1 Alkaloid T3O medium pass
Tcac10G0009610.1 Alkaloid T3O medium pass
Tcac10G0011250.1 Alkaloid T3O low borderline
Tcac10G0011840.1 Alkaloid T3O medium pass
Tcac10G0011840.2 Alkaloid T3O medium pass
Tcac10G0014100.1 Alkaloid T3O medium borderline
Tcac10G0014120.1 Alkaloid T3O medium borderline
Tcac02G0019280.1 Alkaloid TDC low borderline
Tcac08G0014200.1 Alkaloid TDC low borderline
Tcac01G0010470.1 Alkaloid TRI/TRII low borderline
Tcac01G0026720.1 Alkaloid TRI/TRII medium pass
Tcac01G0029740.1 Alkaloid TRI/TRII medium pass
Tcac02G0000700.1 Alkaloid TRI/TRII low borderline
Tcac02G0009630.1 Alkaloid TRI/TRII low borderline
Tcac02G0015090.1 Alkaloid TRI/TRII medium pass
Tcac02G0015090.2 Alkaloid TRI/TRII medium pass
Tcac02G0015090.3 Alkaloid TRI/TRII medium pass
Tcac02G0015140.1 Alkaloid TRI/TRII medium pass