PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Tcac02G0025030.1 Alkaloid TRI/TRII medium pass
Tcac02G0027420.1 Alkaloid TRI/TRII medium pass
Tcac03G0006530.1 Alkaloid TRI/TRII medium pass
Tcac04G0004450.1 Alkaloid TRI/TRII medium pass
Tcac04G0004450.2 Alkaloid TRI/TRII medium pass
Tcac05G0000440.1 Alkaloid TRI/TRII medium pass
Tcac05G0000460.1 Alkaloid TRI/TRII medium pass
Tcac05G0000470.1 Alkaloid TRI/TRII medium pass
Tcac05G0003280.1 Alkaloid TRI/TRII medium pass
Tcac05G0003280.2 Alkaloid TRI/TRII medium pass
Tcac05G0004230.1 Alkaloid TRI/TRII low borderline
Tcac05G0009330.1 Alkaloid TRI/TRII medium pass
Tcac05G0009330.2 Alkaloid TRI/TRII medium pass
Tcac05G0009340.1 Alkaloid TRI/TRII medium pass
Tcac05G0009350.1 Alkaloid TRI/TRII medium pass
Tcac05G0009420.1 Alkaloid TRI/TRII medium pass
Tcac05G0009430.1 Alkaloid TRI/TRII medium pass
Tcac05G0009440.1 Alkaloid TRI/TRII medium pass
Tcac05G0016360.1 Alkaloid TRI/TRII low borderline
Tcac05G0026470.1 Alkaloid TRI/TRII low borderline
Tcac05G0026480.1 Alkaloid TRI/TRII medium pass
Tcac05G0027570.1 Alkaloid TRI/TRII low borderline
Tcac06G0021170.1 Alkaloid TRI/TRII medium pass
Tcac06G0021180.1 Alkaloid TRI/TRII medium pass
Tcac07G0007220.1 Alkaloid TRI/TRII low borderline
Tcac07G0016990.1 Alkaloid TRI/TRII medium pass
Tcac09G0025490.1 Alkaloid TRI/TRII medium pass
Tcac09G0029140.1 Alkaloid TRI/TRII medium pass
Tcac09G0029150.1 Alkaloid TRI/TRII medium pass
Tcac09G0029160.1 Alkaloid TRI/TRII medium pass
Tcac09G0029170.1 Alkaloid TRI/TRII medium pass
Tcac09G0029170.2 Alkaloid TRI/TRII medium pass
Tcac09G0029180.1 Alkaloid TRI/TRII medium pass
Tcac09G0029190.1 Alkaloid TRI/TRII medium pass
Tcac09G0029200.1 Alkaloid TRI/TRII medium pass
Tcac09G0029210.1 Alkaloid TRI/TRII medium pass
Tcac09G0029220.1 Alkaloid TRI/TRII medium pass
Tcac09G0029230.1 Alkaloid TRI/TRII medium pass
Tcac09G0029230.2 Alkaloid TRI/TRII medium pass
Tcac09G0029230.3 Alkaloid TRI/TRII low borderline
Tcac09G0033450.1 Alkaloid TRI/TRII medium pass
Tcac10G0000640.1 Alkaloid TRI/TRII medium pass
Tcac10G0003810.1 Alkaloid TRI/TRII medium pass
Tcac10G0011550.1 Alkaloid TRI/TRII low borderline
Tcac10G0011550.2 Alkaloid TRI/TRII low borderline
Tcac10G0011550.3 Alkaloid TRI/TRII low borderline
Tcac01G0022920.1 Alkaloid TYDC_DDC medium borderline
Tcac02G0000920.1 Alkaloid TYDC_DDC medium borderline
Tcac02G0000930.1 Alkaloid TYDC_DDC medium borderline
Tcac02G0016280.1 Alkaloid TYDC_DDC medium borderline