PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Tcac04G0005470.1 Rosmarinic Acid 4CL medium pass
Tcac04G0017380.1 Rosmarinic Acid 4CL low borderline
Tcac04G0018720.1 Rosmarinic Acid 4CL medium pass
Tcac04G0018720.2 Rosmarinic Acid 4CL medium pass
Tcac04G0020680.1 Rosmarinic Acid 4CL low borderline
Tcac04G0020680.2 Rosmarinic Acid 4CL low borderline
Tcac04G0020680.3 Rosmarinic Acid 4CL low borderline
Tcac04G0020680.4 Rosmarinic Acid 4CL low borderline
Tcac04G0027340.1 Rosmarinic Acid 4CL medium pass
Tcac05G0006610.1 Rosmarinic Acid 4CL medium pass
Tcac05G0006620.1 Rosmarinic Acid 4CL medium pass
Tcac05G0018800.1 Rosmarinic Acid 4CL medium pass
Tcac05G0018800.2 Rosmarinic Acid 4CL medium pass
Tcac05G0018800.3 Rosmarinic Acid 4CL medium pass
Tcac05G0018800.4 Rosmarinic Acid 4CL medium pass
Tcac05G0027380.1 Rosmarinic Acid 4CL low borderline
Tcac06G0000230.1 Rosmarinic Acid 4CL low borderline
Tcac06G0000230.2 Rosmarinic Acid 4CL low borderline
Tcac06G0000230.3 Rosmarinic Acid 4CL low borderline
Tcac06G0007920.1 Rosmarinic Acid 4CL medium pass
Tcac06G0007920.2 Rosmarinic Acid 4CL medium pass
Tcac06G0007920.3 Rosmarinic Acid 4CL medium pass
Tcac06G0011560.1 Rosmarinic Acid 4CL medium pass
Tcac08G0005380.1 Rosmarinic Acid 4CL medium pass
Tcac08G0005390.1 Rosmarinic Acid 4CL medium pass
Tcac08G0005660.1 Rosmarinic Acid 4CL medium pass
Tcac08G0011980.1 Rosmarinic Acid 4CL low borderline
Tcac08G0012890.1 Rosmarinic Acid 4CL medium pass
Tcac08G0012900.1 Rosmarinic Acid 4CL medium pass
Tcac09G0016440.1 Rosmarinic Acid 4CL medium pass
Tcac09G0032460.1 Rosmarinic Acid 4CL medium pass
Tcac10G0008640.1 Rosmarinic Acid 4CL medium pass
Tcac01G0002290.1 Rosmarinic Acid C4H low borderline
Tcac01G0002320.1 Rosmarinic Acid C4H medium pass
Tcac01G0002550.1 Rosmarinic Acid C4H low borderline
Tcac01G0003590.1 Rosmarinic Acid C4H low borderline
Tcac01G0004540.1 Rosmarinic Acid C4H low borderline
Tcac01G0004550.1 Rosmarinic Acid C4H low borderline
Tcac01G0006330.1 Rosmarinic Acid C4H low borderline
Tcac01G0006340.1 Rosmarinic Acid C4H low borderline
Tcac01G0006350.1 Rosmarinic Acid C4H low borderline
Tcac01G0006360.1 Rosmarinic Acid C4H low borderline
Tcac01G0006370.1 Rosmarinic Acid C4H low borderline
Tcac01G0006380.1 Rosmarinic Acid C4H medium pass
Tcac01G0006380.2 Rosmarinic Acid C4H medium pass
Tcac01G0006380.3 Rosmarinic Acid C4H medium pass
Tcac01G0006380.4 Rosmarinic Acid C4H medium pass
Tcac01G0009540.1 Rosmarinic Acid C4H low borderline
Tcac01G0009540.2 Rosmarinic Acid C4H low borderline
Tcac01G0010630.1 Rosmarinic Acid C4H medium pass