PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Tcac01G0010840.1 Rosmarinic Acid C4H low borderline
Tcac01G0014980.1 Rosmarinic Acid C4H low borderline
Tcac01G0016660.1 Rosmarinic Acid C4H low borderline
Tcac01G0018470.1 Rosmarinic Acid C4H medium pass
Tcac01G0018470.2 Rosmarinic Acid C4H low borderline
Tcac01G0019180.1 Rosmarinic Acid C4H low borderline
Tcac01G0020700.1 Rosmarinic Acid C4H low borderline
Tcac01G0020720.1 Rosmarinic Acid C4H medium pass
Tcac01G0020730.1 Rosmarinic Acid C4H low borderline
Tcac01G0031200.1 Rosmarinic Acid C4H low borderline
Tcac01G0031630.1 Rosmarinic Acid C4H low borderline
Tcac01G0034750.1 Rosmarinic Acid C4H low borderline
Tcac01G0034760.1 Rosmarinic Acid C4H low borderline
Tcac01G0034760.2 Rosmarinic Acid C4H low borderline
Tcac01G0034770.1 Rosmarinic Acid C4H low borderline
Tcac01G0034770.2 Rosmarinic Acid C4H low borderline
Tcac01G0034770.3 Rosmarinic Acid C4H low borderline
Tcac01G0034780.1 Rosmarinic Acid C4H low borderline
Tcac01G0037430.1 Rosmarinic Acid C4H low borderline
Tcac01G0037440.1 Rosmarinic Acid C4H low borderline
Tcac02G0001770.1 Rosmarinic Acid C4H low borderline
Tcac02G0002710.1 Rosmarinic Acid C4H medium pass
Tcac02G0002720.1 Rosmarinic Acid C4H low borderline
Tcac02G0007390.1 Rosmarinic Acid C4H medium pass
Tcac02G0009340.1 Rosmarinic Acid C4H low borderline
Tcac02G0009360.1 Rosmarinic Acid C4H low borderline
Tcac02G0009390.1 Rosmarinic Acid C4H low borderline
Tcac02G0015860.1 Rosmarinic Acid C4H low borderline
Tcac02G0017870.1 Rosmarinic Acid C4H low borderline
Tcac02G0019820.1 Rosmarinic Acid C4H low borderline
Tcac02G0024120.1 Rosmarinic Acid C4H low borderline
Tcac02G0024130.1 Rosmarinic Acid C4H low borderline
Tcac02G0024140.1 Rosmarinic Acid C4H low borderline
Tcac02G0024150.1 Rosmarinic Acid C4H medium pass
Tcac02G0024260.1 Rosmarinic Acid C4H low borderline
Tcac02G0024700.1 Rosmarinic Acid C4H medium pass
Tcac02G0029650.1 Rosmarinic Acid C4H low borderline
Tcac02G0029660.1 Rosmarinic Acid C4H low borderline
Tcac02G0029680.1 Rosmarinic Acid C4H low borderline
Tcac02G0029680.2 Rosmarinic Acid C4H low borderline
Tcac02G0029690.1 Rosmarinic Acid C4H low borderline
Tcac02G0029700.1 Rosmarinic Acid C4H low borderline
Tcac02G0029710.1 Rosmarinic Acid C4H low borderline
Tcac02G0029720.1 Rosmarinic Acid C4H low borderline
Tcac02G0029720.2 Rosmarinic Acid C4H low borderline
Tcac02G0030080.1 Rosmarinic Acid C4H medium pass
Tcac02G0031460.1 Rosmarinic Acid C4H low borderline
Tcac03G0003010.1 Rosmarinic Acid C4H low borderline
Tcac03G0003020.1 Rosmarinic Acid C4H medium pass
Tcac03G0003050.1 Rosmarinic Acid C4H medium pass