PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
Tcac03G0022480.2 Flavonoid F3H medium pass
Tcac03G0022500.1 Flavonoid F3H medium pass
Tcac03G0024420.1 Flavonoid F3H medium borderline
Tcac03G0025570.1 Flavonoid F3H medium pass
Tcac04G0018140.1 Flavonoid F3H low borderline
Tcac04G0022900.1 Flavonoid F3H medium borderline
Tcac04G0022920.1 Flavonoid F3H medium borderline
Tcac04G0022930.1 Flavonoid F3H medium borderline
Tcac04G0022950.1 Flavonoid F3H medium borderline
Tcac04G0022960.1 Flavonoid F3H medium borderline
Tcac04G0022970.1 Flavonoid F3H medium borderline
Tcac04G0022970.2 Flavonoid F3H medium borderline
Tcac04G0022980.1 Flavonoid F3H medium borderline
Tcac04G0022980.2 Flavonoid F3H medium borderline
Tcac04G0023000.1 Flavonoid F3H medium borderline
Tcac04G0023040.1 Flavonoid F3H medium borderline
Tcac04G0023060.1 Flavonoid F3H medium borderline
Tcac04G0023070.1 Flavonoid F3H medium borderline
Tcac04G0023070.2 Flavonoid F3H medium borderline
Tcac04G0023080.1 Flavonoid F3H medium borderline
Tcac04G0023080.10 Flavonoid F3H medium borderline
Tcac04G0023080.11 Flavonoid F3H medium borderline
Tcac04G0023080.12 Flavonoid F3H medium borderline
Tcac04G0023080.2 Flavonoid F3H medium borderline
Tcac04G0023080.3 Flavonoid F3H medium borderline
Tcac04G0023080.4 Flavonoid F3H medium borderline
Tcac04G0023080.5 Flavonoid F3H medium borderline
Tcac04G0023080.6 Flavonoid F3H medium borderline
Tcac04G0023080.7 Flavonoid F3H medium borderline
Tcac04G0023080.8 Flavonoid F3H medium borderline
Tcac04G0023080.9 Flavonoid F3H medium borderline
Tcac04G0025960.1 Flavonoid F3H medium borderline
Tcac04G0028350.1 Flavonoid F3H medium borderline
Tcac05G0001470.1 Flavonoid F3H medium borderline
Tcac05G0003490.1 Flavonoid F3H medium borderline
Tcac05G0007270.1 Flavonoid F3H medium borderline
Tcac05G0008920.1 Flavonoid F3H medium borderline
Tcac05G0008930.1 Flavonoid F3H medium borderline
Tcac05G0008930.2 Flavonoid F3H medium borderline
Tcac05G0016630.1 Flavonoid F3H medium borderline
Tcac05G0017290.1 Flavonoid F3H medium borderline
Tcac05G0017290.2 Flavonoid F3H medium borderline
Tcac05G0017310.1 Flavonoid F3H medium borderline
Tcac05G0024700.1 Flavonoid F3H medium borderline
Tcac06G0002990.1 Flavonoid F3H medium borderline
Tcac06G0002990.2 Flavonoid F3H medium borderline
Tcac06G0002990.3 Flavonoid F3H medium borderline
Tcac06G0006720.1 Flavonoid F3H low borderline
Tcac06G0006730.1 Flavonoid F3H low borderline
Tcac06G0006740.1 Flavonoid F3H low borderline