PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Tcac06G0006750.1 Flavonoid F3H low borderline
Tcac06G0006790.1 Flavonoid F3H low borderline
Tcac06G0006800.1 Flavonoid F3H medium borderline
Tcac06G0008670.1 Flavonoid F3H low borderline
Tcac06G0014140.1 Flavonoid F3H medium borderline
Tcac06G0014150.1 Flavonoid F3H medium borderline
Tcac06G0014150.2 Flavonoid F3H medium borderline
Tcac06G0014180.1 Flavonoid F3H medium borderline
Tcac06G0014200.1 Flavonoid F3H medium borderline
Tcac06G0018700.1 Flavonoid F3H low borderline
Tcac06G0019510.1 Flavonoid F3H medium borderline
Tcac06G0019510.2 Flavonoid F3H medium borderline
Tcac06G0019510.3 Flavonoid F3H medium borderline
Tcac06G0021040.1 Flavonoid F3H medium borderline
Tcac06G0021040.2 Flavonoid F3H medium borderline
Tcac07G0005060.1 Flavonoid F3H medium borderline
Tcac07G0005080.1 Flavonoid F3H medium borderline
Tcac07G0005090.1 Flavonoid F3H medium borderline
Tcac07G0005090.2 Flavonoid F3H medium borderline
Tcac07G0005090.3 Flavonoid F3H medium borderline
Tcac07G0009670.1 Flavonoid F3H medium borderline
Tcac07G0013050.1 Flavonoid F3H medium borderline
Tcac07G0013070.1 Flavonoid F3H medium borderline
Tcac07G0013080.1 Flavonoid F3H medium borderline
Tcac07G0013100.1 Flavonoid F3H medium borderline
Tcac07G0013110.1 Flavonoid F3H medium borderline
Tcac07G0013110.2 Flavonoid F3H medium borderline
Tcac07G0014340.1 Flavonoid F3H medium borderline
Tcac07G0014350.1 Flavonoid F3H medium borderline
Tcac07G0014370.1 Flavonoid F3H medium borderline
Tcac07G0014390.1 Flavonoid F3H medium borderline
Tcac07G0016310.1 Flavonoid F3H medium borderline
Tcac08G0006210.1 Flavonoid F3H medium borderline
Tcac08G0011560.1 Flavonoid F3H medium borderline
Tcac08G0011580.1 Flavonoid F3H medium borderline
Tcac08G0011580.2 Flavonoid F3H medium borderline
Tcac08G0011580.3 Flavonoid F3H medium borderline
Tcac08G0012710.1 Flavonoid F3H medium borderline
Tcac08G0012990.1 Flavonoid F3H medium pass
Tcac08G0013120.1 Flavonoid F3H medium borderline
Tcac08G0013130.1 Flavonoid F3H medium borderline
Tcac09G0008980.1 Flavonoid F3H medium borderline
Tcac09G0008980.2 Flavonoid F3H medium borderline
Tcac09G0011510.1 Flavonoid F3H medium borderline
Tcac09G0013320.1 Flavonoid F3H medium borderline
Tcac09G0013330.1 Flavonoid F3H medium borderline
Tcac09G0013340.1 Flavonoid F3H medium borderline
Tcac09G0013510.1 Flavonoid F3H medium borderline
Tcac09G0013530.1 Flavonoid F3H medium borderline
Tcac09G0013530.2 Flavonoid F3H medium borderline