PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Tcac09G0033950.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac10G0016350.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac10G0016360.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac10G0016400.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac10G0016420.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac10G0016440.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac10G0016460.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac10G0016790.1 Steroid BR6OX2/CYP85A2 low borderline
TcacsCAffold_540000440.1 Steroid BR6OX2/CYP85A2 low borderline
TcacsCAffold_540000450.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac01G0011560.1 Steroid CAS medium pass
Tcac01G0011560.2 Steroid CAS medium pass
Tcac01G0025500.1 Steroid CAS medium pass
Tcac01G0033210.1 Steroid CAS medium pass
Tcac02G0015880.1 Steroid CAS medium pass
Tcac02G0015890.1 Steroid CAS medium pass
Tcac02G0015890.2 Steroid CAS medium pass
Tcac03G0007660.1 Steroid CAS medium pass
Tcac03G0007660.2 Steroid CAS medium pass
Tcac03G0009620.1 Steroid CAS medium pass
Tcac03G0025870.1 Steroid CAS medium pass
Tcac03G0025880.1 Steroid CAS medium pass
Tcac04G0014520.1 Steroid CAS medium pass
Tcac04G0021120.1 Steroid CAS medium pass
Tcac04G0021120.2 Steroid CAS medium pass
Tcac05G0010760.1 Steroid CAS medium pass
Tcac05G0010760.2 Steroid CAS medium pass
Tcac05G0010760.3 Steroid CAS medium pass
Tcac05G0010760.4 Steroid CAS medium pass
Tcac05G0021270.1 Steroid CAS medium pass
Tcac05G0021270.10 Steroid CAS medium pass
Tcac05G0021270.11 Steroid CAS medium pass
Tcac05G0021270.2 Steroid CAS medium pass
Tcac05G0021270.3 Steroid CAS medium pass
Tcac05G0021270.4 Steroid CAS medium pass
Tcac05G0021270.5 Steroid CAS medium pass
Tcac05G0021270.6 Steroid CAS medium pass
Tcac05G0021270.7 Steroid CAS medium pass
Tcac05G0021270.8 Steroid CAS medium pass
Tcac05G0021270.9 Steroid CAS medium pass
Tcac05G0026150.1 Steroid CAS medium pass
Tcac05G0026210.1 Steroid CAS medium pass
Tcac05G0026210.2 Steroid CAS medium pass
Tcac05G0026210.3 Steroid CAS medium pass
Tcac06G0003390.1 Steroid CAS medium pass
Tcac06G0003390.2 Steroid CAS medium pass
Tcac06G0003400.1 Steroid CAS medium pass
Tcac06G0003440.1 Steroid CAS medium pass
Tcac06G0004760.1 Steroid CAS medium pass
Tcac06G0004840.1 Steroid CAS medium pass