PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Tcac08G0003830.1 Steroid DWF4/CYP90B1 low borderline
Tcac08G0003850.1 Steroid DWF4/CYP90B1 low borderline
Tcac08G0003860.1 Steroid DWF4/CYP90B1 low borderline
Tcac08G0003870.1 Steroid DWF4/CYP90B1 low borderline
Tcac08G0008880.1 Steroid DWF4/CYP90B1 low borderline
Tcac08G0008880.2 Steroid DWF4/CYP90B1 low borderline
Tcac08G0008890.1 Steroid DWF4/CYP90B1 low borderline
Tcac08G0008900.1 Steroid DWF4/CYP90B1 low borderline
Tcac08G0008960.1 Steroid DWF4/CYP90B1 low borderline
Tcac08G0008970.1 Steroid DWF4/CYP90B1 low borderline
Tcac08G0009060.1 Steroid DWF4/CYP90B1 low borderline
Tcac08G0009080.1 Steroid DWF4/CYP90B1 low borderline
Tcac09G0000060.2 Steroid DWF4/CYP90B1 medium borderline
Tcac09G0007790.1 Steroid DWF4/CYP90B1 low borderline
Tcac09G0020590.1 Steroid DWF4/CYP90B1 low borderline
Tcac09G0020590.2 Steroid DWF4/CYP90B1 low borderline
Tcac09G0028580.1 Steroid DWF4/CYP90B1 medium borderline
Tcac09G0028760.1 Steroid DWF4/CYP90B1 medium borderline
Tcac09G0028770.1 Steroid DWF4/CYP90B1 medium borderline
Tcac09G0029540.1 Steroid DWF4/CYP90B1 medium borderline
Tcac09G0030510.1 Steroid DWF4/CYP90B1 low borderline
Tcac09G0034140.1 Steroid DWF4/CYP90B1 medium borderline
Tcac10G0009610.1 Steroid DWF4/CYP90B1 low borderline
Tcac10G0010240.1 Steroid DWF4/CYP90B1 low borderline
Tcac10G0014100.1 Steroid DWF4/CYP90B1 low borderline
Tcac10G0014120.1 Steroid DWF4/CYP90B1 low borderline
Tcac10G0016510.1 Steroid DWF4/CYP90B1 medium borderline
Tcac10G0017170.1 Steroid DWF4/CYP90B1 medium borderline
Tcac10G0017170.2 Steroid DWF4/CYP90B1 medium borderline
Tcac10G0017170.3 Steroid DWF4/CYP90B1 medium borderline
Tcac10G0017170.4 Steroid DWF4/CYP90B1 low borderline
Tcac06G0005250.1 Steroid DWF5 medium pass
Tcac04G0011420.1 Steroid DWF7 medium pass
Tcac05G0007790.1 Steroid FK high pass
Tcac05G0007790.2 Steroid FK high pass
Tcac05G0007790.3 Steroid FK high pass
Tcac08G0017420.1 Steroid FK high pass
Tcac01G0022340.1 Steroid HYD1 high pass
Tcac01G0002550.1 Steroid ROT3/CYP90C1 medium borderline
Tcac03G0020970.1 Steroid ROT3/CYP90C1 low borderline
Tcac03G0023550.1 Steroid ROT3/CYP90C1 medium borderline
Tcac03G0024850.1 Steroid ROT3/CYP90C1 medium borderline
Tcac08G0010390.1 Steroid ROT3/CYP90C1 low borderline
Tcac09G0028770.2 Steroid ROT3/CYP90C1 medium borderline
Tcac10G0000010.1 Steroid ROT3/CYP90C1 medium borderline
Tcac10G0000010.2 Steroid ROT3/CYP90C1 medium borderline
Tcac01G0034380.1 Steroid SMO1/SMO2 medium pass
Tcac01G0035080.1 Steroid SMO1/SMO2 medium pass
Tcac01G0035090.1 Steroid SMO1/SMO2 medium pass
Tcac01G0036480.1 Steroid SMO1/SMO2 medium pass