PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr7.1650 Steroid CYP90D1 low borderline
fragaria_mandshurica_evm.model.chr7.1990 Steroid CYP90D1 medium borderline
fragaria_mandshurica_evm.model.chr7.2030 Steroid CYP90D1 low borderline
fragaria_mandshurica_evm.model.chr7.2132 Steroid CYP90D1 low borderline
fragaria_mandshurica_evm.model.chr7.292 Steroid CYP90D1 low borderline
fragaria_mandshurica_evm.model.chr7.405 Steroid CYP90D1 medium borderline
fragaria_mandshurica_evm.model.chr0.1250 Steroid DET2 medium pass
fragaria_mandshurica_evm.model.chr2.457 Steroid DET2 low borderline
fragaria_mandshurica_evm.model.chr2.458 Steroid DET2 low borderline
fragaria_mandshurica_evm.model.chr2.459 Steroid DET2 medium pass
fragaria_mandshurica_evm.model.chr6.1176 Steroid DET2 medium pass
fragaria_mandshurica_evm.model.chr7.1635 Steroid DET2 low borderline
fragaria_mandshurica_evm.model.chr4.3068 Steroid DWF1 medium pass
fragaria_mandshurica_evm.model.chr5.2759 Steroid DWF1 low borderline
fragaria_mandshurica_evm.model.chr0.1288 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr1.1490 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr1.1677 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr1.1679 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr1.2466 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr1.2467 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr1.909 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr2.1181 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr2.2771 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr2.2853 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr2.2854 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr2.675 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr3.1301 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr3.1394 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr3.2716 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr3.2747 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr3.2916 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr3.2932 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr3.3349 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr4.1463 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr4.2073 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr4.2325 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr4.2567 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr5.1263 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr5.1368 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr5.160 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr5.161 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr5.164 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr5.1705 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr5.1937 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr5.2515 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr5.2516 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr5.678 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr5.776 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr6.1565 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr6.1575 Steroid DWF4/CYP90B1 low borderline