PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr6.1970 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr6.2274 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr6.2404 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr6.2909 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr6.3542 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr6.3610 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr6.4604 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr6.725 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr6.896 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr6.897 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr6.98 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr7.1179 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr7.1187 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr7.1819 Steroid DWF4/CYP90B1 medium borderline
fragaria_mandshurica_evm.model.chr7.2483 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr7.801_evm.model.chr7.802 Steroid DWF4/CYP90B1 low borderline
fragaria_mandshurica_evm.model.chr6.3222 Steroid DWF5 medium borderline
fragaria_mandshurica_evm.model.chr2.2137 Steroid DWF7 medium pass
fragaria_mandshurica_evm.model.chr6.1984 Steroid FK high pass
fragaria_mandshurica_evm.model.chr4.1911 Steroid HYD1 high pass
fragaria_mandshurica_evm.model.chr1.1336 Steroid ROT3/CYP90C1 medium borderline
fragaria_mandshurica_evm.model.chr3.1532 Steroid ROT3/CYP90C1 low borderline
fragaria_mandshurica_evm.model.chr3.2832 Steroid ROT3/CYP90C1 medium borderline
fragaria_mandshurica_evm.model.chr4.2319 Steroid ROT3/CYP90C1 medium borderline
fragaria_mandshurica_evm.model.chr4.2320 Steroid ROT3/CYP90C1 medium borderline
fragaria_mandshurica_evm.model.chr5.166 Steroid ROT3/CYP90C1 medium borderline
fragaria_mandshurica_evm.model.chr6.4101 Steroid ROT3/CYP90C1 medium borderline
fragaria_mandshurica_evm.model.chr6.4122 Steroid ROT3/CYP90C1 medium borderline
fragaria_mandshurica_evm.model.chr3.2541 Steroid SMO1/SMO2 medium pass
fragaria_mandshurica_evm.model.chr5.80 Steroid SMO1/SMO2 medium pass
fragaria_mandshurica_evm.model.chr7.844 Steroid SMO1/SMO2 medium pass
fragaria_mandshurica_evm.model.chr0.107 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr0.223 Steroid SMT1/SMT2/SMT3 low borderline
fragaria_mandshurica_evm.model.chr0.224 Steroid SMT1/SMT2/SMT3 low borderline
fragaria_mandshurica_evm.model.chr1.1590_evm.model.chr1.1591 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr1.49 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr1.71 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr2.132 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr2.133 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr2.134 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr2.135 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr2.136 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr2.138 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr2.139 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr2.1430 Steroid SMT1/SMT2/SMT3 low borderline
fragaria_mandshurica_evm.model.chr2.1431 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr2.1621 Steroid SMT1/SMT2/SMT3 low borderline
fragaria_mandshurica_evm.model.chr2.1800 Steroid SMT1/SMT2/SMT3 low borderline
fragaria_mandshurica_evm.model.chr2.2699 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr2.2900 Steroid SMT1/SMT2/SMT3 low borderline