PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr2.3189 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr2.400 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr2.602 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr2.835 Steroid SMT1/SMT2/SMT3 low borderline
fragaria_mandshurica_evm.model.chr3.1909 Steroid SMT1/SMT2/SMT3 low borderline
fragaria_mandshurica_evm.model.chr3.1911 Steroid SMT1/SMT2/SMT3 low borderline
fragaria_mandshurica_evm.model.chr3.2131 Steroid SMT1/SMT2/SMT3 low borderline
fragaria_mandshurica_evm.model.chr4.1956 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr4.2196 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr4.2687 Steroid SMT1/SMT2/SMT3 low borderline
fragaria_mandshurica_evm.model.chr4.3094 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr4.56 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr4.591 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr4.721 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr4.722 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr4.940 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr4.941 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr4.942 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr5.1581 Steroid SMT1/SMT2/SMT3 low borderline
fragaria_mandshurica_evm.model.chr5.828 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr6.2898 Steroid SMT1/SMT2/SMT3 low borderline
fragaria_mandshurica_evm.model.chr6.4046 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr6.4148 Steroid SMT1/SMT2/SMT3 low borderline
fragaria_mandshurica_evm.model.chr6.49 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr7.1359 Steroid SMT1/SMT2/SMT3 low borderline
fragaria_mandshurica_evm.model.chr7.1467 Steroid SMT1/SMT2/SMT3 medium pass
fragaria_mandshurica_evm.model.chr1.1548 Steroid SQE medium pass
fragaria_mandshurica_evm.model.chr1.1549 Steroid SQE medium pass
fragaria_mandshurica_evm.model.chr1.1967 Steroid SQE medium pass
fragaria_mandshurica_evm.model.chr1.2424 Steroid SQE medium pass
fragaria_mandshurica_evm.model.chr1.2426 Steroid SQE medium pass
fragaria_mandshurica_evm.model.chr2.192 Steroid SQE medium pass
fragaria_mandshurica_evm.model.chr2.72 Steroid SQE medium pass
fragaria_mandshurica_evm.model.chr3.828 Steroid SQE low borderline
fragaria_mandshurica_evm.model.chr4.1418 Steroid SQE medium pass
fragaria_mandshurica_evm.model.chr5.1272 Steroid SQE low borderline
fragaria_mandshurica_evm.model.chr1.2103 Steroid SQS/FDFT1 medium pass
fragaria_mandshurica_evm.model.chr2.662 Steroid SQS/FDFT1 high pass
fragaria_mandshurica_evm.model.chr3.3617 Steroid SQS/FDFT1 medium pass
fragaria_mandshurica_evm.model.chr5.36 Steroid SQS/FDFT1 low borderline
fragaria_mandshurica_evm.model.chr6.3485 Steroid SQS/FDFT1 medium pass