PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2446
Candidate Protein Records
2044
Pathway-Level Records
5198
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Protein/Isoform Record Pathway Family Confidence Status
Garb01G0005370 Alkaloid H6H low borderline
Garb01G0007090 Alkaloid H6H low borderline
Garb01G0016980 Alkaloid H6H medium borderline
Garb01G0016990 Alkaloid H6H medium borderline
Garb01G0018140 Alkaloid H6H medium borderline
Garb01G0022170 Alkaloid H6H low borderline
Garb01G0022180 Alkaloid H6H low borderline
Garb02G0000880 Alkaloid H6H low borderline
Garb02G0007420 Alkaloid H6H low borderline
Garb02G0009300 Alkaloid H6H low borderline
Garb03G0000620 Alkaloid H6H medium borderline
Garb03G0000640 Alkaloid H6H medium borderline
Garb03G0000650 Alkaloid H6H high pass
Garb03G0000660 Alkaloid H6H medium pass
Garb03G0000670 Alkaloid H6H medium borderline
Garb03G0011800 Alkaloid H6H low borderline
Garb03G0015760 Alkaloid H6H medium borderline
Garb03G0020460 Alkaloid H6H low borderline
Garb03G0020470 Alkaloid H6H low borderline
Garb03G0020490 Alkaloid H6H low borderline
Garb03G0020820 Alkaloid H6H medium borderline
Garb04G0019860 Alkaloid H6H low borderline
Garb04G0022030 Alkaloid H6H high pass
Garb04G0026450 Alkaloid H6H low borderline
Garb04G0034940 Alkaloid H6H medium borderline
Garb05G0007000 Alkaloid H6H medium pass
Garb05G0009030 Alkaloid H6H low borderline
Garb05G0009170 Alkaloid H6H low borderline
Garb05G0012420 Alkaloid H6H low borderline
Garb05G0012480 Alkaloid H6H low borderline
Garb05G0012500 Alkaloid H6H low borderline
Garb05G0012630 Alkaloid H6H low borderline
Garb05G0017170 Alkaloid H6H low borderline
Garb06G0007600 Alkaloid H6H low borderline
Garb06G0013490 Alkaloid H6H medium borderline
Garb06G0021230 Alkaloid H6H high pass
Garb06G0030190 Alkaloid H6H low borderline
Garb06G0030200 Alkaloid H6H low borderline
Garb06G0030210 Alkaloid H6H low borderline
Garb07G0001770 Alkaloid H6H low borderline
Garb07G0007110 Alkaloid H6H low borderline
Garb07G0010900 Alkaloid H6H medium borderline
Garb07G0011210 Alkaloid H6H medium borderline
Garb07G0012000 Alkaloid H6H medium pass
Garb07G0020090 Alkaloid H6H low borderline
Garb08G0001840 Alkaloid H6H medium borderline
Garb08G0004270 Alkaloid H6H low borderline
Garb09G0002900 Alkaloid H6H low borderline
Garb09G0004940 Alkaloid H6H medium borderline
Garb09G0004950 Alkaloid H6H medium borderline