PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2446
Candidate Protein Records
2044
Pathway-Level Records
5198
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Garb03G0004610 Alkaloid G8O/G8H medium pass
Garb04G0020150 Alkaloid G8O/G8H medium borderline
Garb04G0020160 Alkaloid G8O/G8H medium borderline
Garb04G0020170 Alkaloid G8O/G8H medium borderline
Garb06G0000880 Alkaloid G8O/G8H low borderline
Garb06G0012900 Alkaloid G8O/G8H medium pass
Garb06G0030730 Alkaloid G8O/G8H medium borderline
Garb06G0033120 Alkaloid G8O/G8H low borderline
Garb07G0006410 Alkaloid G8O/G8H medium borderline
Garb07G0030840 Alkaloid G8O/G8H medium pass
Garb07G0031780 Alkaloid G8O/G8H medium borderline
Garb08G0016670 Alkaloid G8O/G8H medium borderline
Garb09G0000100 Alkaloid G8O/G8H medium borderline
Garb09G0003210 Alkaloid G8O/G8H medium borderline
Garb09G0003260 Alkaloid G8O/G8H medium borderline
Garb09G0017600 Alkaloid G8O/G8H medium borderline
Garb09G0022660 Alkaloid G8O/G8H medium borderline
Garb10G0014550 Alkaloid G8O/G8H medium borderline
Garb10G0017430 Alkaloid G8O/G8H medium borderline
Garb10G0029120 Alkaloid G8O/G8H medium borderline
Garb11G0001450 Alkaloid G8O/G8H medium borderline
Garb11G0010050 Alkaloid G8O/G8H medium borderline
Garb11G0021680 Alkaloid G8O/G8H medium borderline
Garb11G0021690 Alkaloid G8O/G8H medium pass
Garb12G0014580 Alkaloid G8O/G8H low borderline
Garb12G0027800 Alkaloid G8O/G8H medium borderline
Garb13G0002250 Alkaloid G8O/G8H low borderline
Garb13G0016570 Alkaloid G8O/G8H medium pass
Garb13G0016620 Alkaloid G8O/G8H medium borderline
Garb13G0026220 Alkaloid G8O/G8H low borderline
Garb13G0026230 Alkaloid G8O/G8H medium pass
Garb01G0025850 Alkaloid GES low borderline
Garb02G0002830 Alkaloid GES medium pass
Garb03G0005030 Alkaloid GES low borderline
Garb03G0005280 Alkaloid GES medium pass
Garb04G0000560 Alkaloid GES medium pass
Garb04G0000600 Alkaloid GES medium pass
Garb04G0000630 Alkaloid GES low borderline
Garb04G0000640 Alkaloid GES medium pass
Garb04G0000660 Alkaloid GES medium pass
Garb04G0000670 Alkaloid GES medium pass
Garb04G0001930 Alkaloid GES medium pass
Garb04G0006080 Alkaloid GES low borderline
Garb04G0013090 Alkaloid GES medium pass
Garb04G0018640 Alkaloid GES medium pass
Garb04G0019890 Alkaloid GES medium pass
Garb04G0019910 Alkaloid GES medium pass
Garb04G0019920 Alkaloid GES medium pass
Garb04G0026040 Alkaloid GES medium pass
Garb04G0026110 Alkaloid GES medium pass