Gossypium arboreum (gossypium_arboreum)
Imported from atlas release summary for Gossypium arboreum.
2446
Candidate Protein Records
2044
Pathway-Level Records
5198
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5198
Family-Level Calls
C4H
7.23%
C3'H/CYP98A
6.0%
BAHD
4.87%
IFS
3.92%
CYP76
3.81%
UGT
3.66%
T3O
3.56%
F3H
3.48%
Other Families
63.47%
More Families (98)
POD
180
3.46%
4CL
174
3.35%
7DLGT
171
3.29%
UFGT
162
3.12%
BR6OX2/CYP85A2
107
2.06%
CODM/T6ODM
101
1.94%
DWF4/CYP90B1
101
1.94%
NMT
100
1.92%
F3'H/CYP75B
98
1.89%
STR
92
1.77%
TPS
86
1.65%
H6H
85
1.64%
CAD
81
1.56%
CYP90D1
74
1.42%
CYP71
74
1.42%
GES
73
1.4%
LAC
72
1.39%
TRI/TRII
65
1.25%
CAS
65
1.25%
7DLH
54
1.04%
CSE
51
0.98%
SMT1/SMT2/SMT3
51
0.98%
GS
49
0.94%
BBE
48
0.92%
HCT
48
0.92%
COMT
48
0.92%
G8O/G8H
42
0.81%
PYKS
39
0.75%
RAS
39
0.75%
IO
36
0.69%
F3'5'H/CYP75A
35
0.67%
F5H/CYP84A
35
0.67%
T16H
34
0.65%
FNS
34
0.65%
IFR
34
0.65%
NCS
33
0.63%
16OMT
32
0.62%
CCR
29
0.56%
SGD
27
0.52%
SLS
25
0.48%
ANR
24
0.46%
CYP51G1
24
0.46%
TAT
23
0.44%
BR6OX1/CYP85A1
23
0.44%
PMT
22
0.42%
COR
22
0.42%
PAL
21
0.4%
CPD/CYP90A1
20
0.38%
ROT3/CYP90C1
19
0.37%
8HGO
18
0.35%
DFR
17
0.33%
SQE
15
0.29%
TYDC_DDC
13
0.25%
ANS/LDOX
13
0.25%
GGPPS
13
0.25%
CYP719
12
0.23%
CHS
12
0.23%
CNMT
11
0.21%
LAMT
11
0.21%
HMGR
11
0.21%
CYP80B1
10
0.19%
SQS/FDFT1
9
0.17%
SMO1/SMO2
9
0.17%
HMGS
9
0.17%
FPPS
9
0.17%
MPO
8
0.15%
ISY
8
0.15%
CCoAOMT
8
0.15%
CPR
7
0.13%
AACT
7
0.13%
DXS
7
0.13%
TDC
6
0.12%
HPPR
6
0.12%
DET2
6
0.12%
XMT_MXMT_DXMT
5
0.1%
MVK
5
0.1%
MVD
5
0.1%
6OMT_4OMT_SOMT
4
0.08%
ADC
4
0.08%
CHI
4
0.08%
ODC
3
0.06%
FLS
3
0.06%
DWF1
3
0.06%
MCT/IspD
3
0.06%
HDR/IspH
3
0.06%
DXR
3
0.06%
CYP80F1
2
0.04%
DWF5
2
0.04%
MDS/IspF
2
0.04%
HDS/IspG
2
0.04%
GPPS
2
0.04%
DWF7
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
HYD1
1
0.02%
CMK/IspE
1
0.02%
IDI
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 612 | 21 | BAHD (203) | View species results |
| Alkaloid pathway | 464 | 25 | 7DLGT (81) | View species results |
| Phenylpropanoid pathway | 446 | 12 | POD (173) | View species results |
| Flavonoid pathway | 238 | 13 | UFGT (150) | View species results |
| Rosmarinic acid pathway | 159 | 7 | C4H (69) | View species results |
| Steroid pathway | 125 | 12 | CAS (59) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2100 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 340 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Garb12G0017320 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Garb12G0020890 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Garb12G0026460 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Garb13G0000020 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Garb13G0010810 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Garb13G0016490 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Garb13G0028860 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Garb13G0031850 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Garb02G0009850 | Steroid | SQE | medium | pass |
| Garb03G0011410 | Steroid | SQE | medium | pass |
| Garb04G0016220 | Steroid | SQE | medium | pass |
| Garb05G0003250 | Steroid | SQE | medium | pass |
| Garb07G0018050 | Steroid | SQE | medium | pass |
| Garb08G0020710 | Steroid | SQE | medium | pass |
| Garb10G0006130 | Steroid | SQE | medium | pass |
| Garb12G0008420 | Steroid | SQE | medium | pass |
| Garb12G0008430 | Steroid | SQE | medium | pass |
| Garb12G0008440 | Steroid | SQE | high | pass |
| Garb12G0008450 | Steroid | SQE | medium | pass |
| Garb12G0008460 | Steroid | SQE | medium | pass |
| Garb12G0008470 | Steroid | SQE | medium | pass |
| Garb12G0008480 | Steroid | SQE | medium | pass |
| Garb12G0019590 | Steroid | SQE | medium | pass |
| Garb01G0019480 | Steroid | SQS/FDFT1 | medium | pass |
| Garb05G0001820 | Steroid | SQS/FDFT1 | high | pass |
| Garb06G0031430 | Steroid | SQS/FDFT1 | low | borderline |
| Garb07G0011140 | Steroid | SQS/FDFT1 | high | pass |
| Garb07G0030410 | Steroid | SQS/FDFT1 | low | borderline |
| Garb08G0026850 | Steroid | SQS/FDFT1 | medium | pass |
| Garb09G0003290 | Steroid | SQS/FDFT1 | low | borderline |
| Garb11G0033860 | Steroid | SQS/FDFT1 | medium | pass |
| Garb12G0016700 | Steroid | SQS/FDFT1 | medium | pass |