PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2446
Candidate Protein Records
2044
Pathway-Level Records
5198
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Garb12G0029240 Terpenoid FPPS medium pass
Garb13G0030170 Terpenoid FPPS medium pass
Garb01G0023910 Terpenoid GGPPS medium borderline
Garb02G0005290 Terpenoid GGPPS medium borderline
Garb02G0013120 Terpenoid GGPPS medium borderline
Garb03G0002980 Terpenoid GGPPS medium pass
Garb06G0008150 Terpenoid GGPPS medium borderline
Garb06G0010980 Terpenoid GGPPS low borderline
Garb06G0015830 Terpenoid GGPPS medium pass
Garb06G0022950 Terpenoid GGPPS low borderline
Garb07G0013410 Terpenoid GGPPS medium borderline
Garb09G0010930 Terpenoid GGPPS medium borderline
Garb13G0003970 Terpenoid GGPPS medium pass
Garb13G0008930 Terpenoid GGPPS medium pass
Garb13G0028650 Terpenoid GGPPS medium borderline
Garb09G0019740 Terpenoid GPPS medium borderline
Garb12G0011680 Terpenoid GPPS medium pass
Garb05G0015280 Terpenoid HDR/IspH high pass
Garb06G0009330 Terpenoid HDR/IspH high pass
Garb13G0014340 Terpenoid HDR/IspH high pass
Garb03G0024890 Terpenoid HDS/IspG high pass
Garb10G0031500 Terpenoid HDS/IspG low borderline
Garb04G0018430 Terpenoid HMGR medium pass
Garb05G0004330 Terpenoid HMGR medium pass
Garb05G0004340 Terpenoid HMGR medium pass
Garb05G0004350 Terpenoid HMGR medium pass
Garb05G0004360 Terpenoid HMGR medium pass
Garb06G0010370 Terpenoid HMGR medium pass
Garb07G0009990 Terpenoid HMGR medium pass
Garb07G0017370 Terpenoid HMGR medium pass
Garb07G0017380 Terpenoid HMGR medium pass
Garb07G0017390 Terpenoid HMGR medium pass
Garb13G0025950 Terpenoid HMGR medium pass
Garb01G0002870 Terpenoid HMGS medium pass
Garb01G0019140 Terpenoid HMGS medium pass
Garb03G0004100 Terpenoid HMGS high pass
Garb04G0020310 Terpenoid HMGS medium pass
Garb04G0029960 Terpenoid HMGS medium pass
Garb06G0009810 Terpenoid HMGS medium pass
Garb07G0011550 Terpenoid HMGS high pass
Garb07G0014640 Terpenoid HMGS high pass
Garb07G0018930 Terpenoid HMGS medium pass
Garb03G0013250 Terpenoid IDI medium pass
Garb01G0018060 Terpenoid MCT/IspD high pass
Garb06G0000630 Terpenoid MCT/IspD low borderline
Garb06G0006510 Terpenoid MCT/IspD low borderline
Garb02G0000100 Terpenoid MDS/IspF low borderline
Garb03G0002900 Terpenoid MDS/IspF high pass
Garb09G0005590 Terpenoid MVD low borderline
Garb10G0008060 Terpenoid MVD low borderline