PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2446
Candidate Protein Records
2044
Pathway-Level Records
5198
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Garb09G0001600 Alkaloid BBE medium borderline
Garb09G0009700 Alkaloid BBE medium borderline
Garb09G0014790 Alkaloid BBE medium borderline
Garb09G0014800 Alkaloid BBE medium borderline
Garb09G0014820 Alkaloid BBE medium borderline
Garb09G0014830 Alkaloid BBE medium borderline
Garb09G0014850 Alkaloid BBE medium borderline
Garb09G0023620 Alkaloid BBE medium borderline
Garb10G0031000 Alkaloid BBE medium borderline
Garb10G0031010 Alkaloid BBE medium borderline
Garb11G0001700 Alkaloid BBE medium borderline
Garb11G0005820 Alkaloid BBE medium borderline
Garb11G0009930 Alkaloid BBE medium borderline
Garb11G0009970 Alkaloid BBE medium borderline
Garb11G0009980 Alkaloid BBE medium borderline
Garb11G0009990 Alkaloid BBE medium borderline
Garb11G0016990 Alkaloid BBE medium borderline
Garb11G0017000 Alkaloid BBE medium borderline
Garb11G0017010 Alkaloid BBE medium borderline
Garb11G0017020 Alkaloid BBE medium borderline
Garb11G0024830 Alkaloid BBE low borderline
Garb12G0027690 Alkaloid BBE medium borderline
Garb12G0027700 Alkaloid BBE medium borderline
Garb12G0027710 Alkaloid BBE medium borderline
Garb12G0027720 Alkaloid BBE medium borderline
Garb12G0027730 Alkaloid BBE medium borderline
Garb13G0000920 Alkaloid BBE medium borderline
Garb13G0000930 Alkaloid BBE medium borderline
Garb13G0017000 Alkaloid BBE medium borderline
Garb13G0024110 Alkaloid BBE medium borderline
Garb13G0024120 Alkaloid BBE medium borderline
Garb01G0015140 Alkaloid CNMT low borderline
Garb01G0019380 Alkaloid CNMT low borderline
Garb01G0028880 Alkaloid CNMT medium borderline
Garb01G0028890 Alkaloid CNMT medium borderline
Garb01G0032570 Alkaloid CNMT low borderline
Garb02G0006410 Alkaloid CNMT low borderline
Garb05G0012260 Alkaloid CNMT medium pass
Garb05G0012270 Alkaloid CNMT medium pass
Garb10G0035410 Alkaloid CNMT low borderline
Garb11G0005220 Alkaloid CNMT low borderline
Garb12G0002330 Alkaloid CNMT low borderline
Garb01G0000750 Alkaloid CODM/T6ODM medium borderline
Garb01G0008800 Alkaloid CODM/T6ODM medium borderline
Garb01G0011630 Alkaloid CODM/T6ODM medium borderline
Garb01G0011640 Alkaloid CODM/T6ODM medium borderline
Garb01G0014160 Alkaloid CODM/T6ODM medium borderline
Garb01G0014370 Alkaloid CODM/T6ODM medium borderline
Garb01G0014820 Alkaloid CODM/T6ODM medium borderline
Garb01G0016940 Alkaloid CODM/T6ODM medium borderline