PlantSME Plant secondary metabolism enzyme database

Gossypium arboreum (gossypium_arboreum)

Imported from atlas release summary for Gossypium arboreum.

2044
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 612 21 BAHD (203) View species results
Alkaloid pathway 464 25 7DLGT (81) View species results
Phenylpropanoid pathway 446 12 POD (173) View species results
Flavonoid pathway 238 13 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (69) View species results
Steroid pathway 125 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2100 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Garb13G0010950 Steroid CYP90D1 low borderline
Garb13G0011060 Steroid CYP90D1 low borderline
Garb13G0011090 Steroid CYP90D1 low borderline
Garb13G0011110 Steroid CYP90D1 low borderline
Garb13G0011590 Steroid CYP90D1 low borderline
Garb13G0011600 Steroid CYP90D1 low borderline
Garb13G0011610 Steroid CYP90D1 low borderline
Garb13G0012870 Steroid CYP90D1 medium borderline
Garb13G0016580 Steroid CYP90D1 low borderline
Garb13G0016630 Steroid CYP90D1 low borderline
Garb13G0017280 Steroid CYP90D1 low borderline
Garb13G0028800 Steroid CYP90D1 medium borderline
Garb13G0029680 Steroid CYP90D1 low borderline
Garb13G0033360 Steroid CYP90D1 low borderline
Garb01G0032430 Steroid DET2 low borderline
Garb09G0000330 Steroid DET2 low borderline
Garb09G0000340 Steroid DET2 low borderline
Garb12G0003260 Steroid DET2 low borderline
Garb12G0024360 Steroid DET2 medium pass
Garb13G0013580 Steroid DET2 low borderline
Garb05G0013160 Steroid DWF1 medium pass
Garb05G0013170 Steroid DWF1 medium pass
Garb13G0016340 Steroid DWF1 medium pass
Garb01G0003150 Steroid DWF4/CYP90B1 medium borderline
Garb01G0003290 Steroid DWF4/CYP90B1 medium borderline
Garb01G0003300 Steroid DWF4/CYP90B1 medium borderline
Garb01G0007000 Steroid DWF4/CYP90B1 low borderline
Garb01G0014320 Steroid DWF4/CYP90B1 low borderline
Garb01G0017310 Steroid DWF4/CYP90B1 low borderline
Garb01G0017320 Steroid DWF4/CYP90B1 low borderline
Garb01G0018960 Steroid DWF4/CYP90B1 low borderline
Garb01G0022300 Steroid DWF4/CYP90B1 low borderline
Garb01G0022320 Steroid DWF4/CYP90B1 low borderline
Garb01G0025450 Steroid DWF4/CYP90B1 low borderline
Garb01G0025470 Steroid DWF4/CYP90B1 low borderline
Garb01G0034500 Steroid DWF4/CYP90B1 low borderline
Garb02G0003490 Steroid DWF4/CYP90B1 low borderline
Garb02G0007300 Steroid DWF4/CYP90B1 low borderline
Garb02G0007790 Steroid DWF4/CYP90B1 low borderline
Garb02G0009130 Steroid DWF4/CYP90B1 low borderline
Garb02G0010570 Steroid DWF4/CYP90B1 low borderline
Garb02G0015850 Steroid DWF4/CYP90B1 low borderline
Garb03G0003150 Steroid DWF4/CYP90B1 medium borderline
Garb03G0003170 Steroid DWF4/CYP90B1 medium borderline
Garb03G0004280 Steroid DWF4/CYP90B1 low borderline
Garb03G0026850 Steroid DWF4/CYP90B1 low borderline
Garb04G0000450 Steroid DWF4/CYP90B1 low borderline
Garb04G0007050 Steroid DWF4/CYP90B1 low borderline
Garb04G0009230 Steroid DWF4/CYP90B1 low borderline
Garb04G0013000 Steroid DWF4/CYP90B1 medium borderline