PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status
OoffiChr01g01366.1 Phenylpropanoid 4CL medium pass
OoffiChr01g02199.1 Phenylpropanoid 4CL low borderline
OoffiChr01g02326.1 Phenylpropanoid 4CL low borderline
OoffiChr01g02909.1 Phenylpropanoid 4CL low borderline
OoffiChr01g02909.2 Phenylpropanoid 4CL low borderline
OoffiChr01g02909.3 Phenylpropanoid 4CL low borderline
OoffiChr01g02909.4 Phenylpropanoid 4CL low borderline
OoffiChr01g03635.1 Phenylpropanoid 4CL low borderline
OoffiChr01g03635.2 Phenylpropanoid 4CL low borderline
OoffiChr02g00120.1 Phenylpropanoid 4CL medium pass
OoffiChr02g00545.1 Phenylpropanoid 4CL medium pass
OoffiChr02g01653.1 Phenylpropanoid 4CL low borderline
OoffiChr02g03286.1 Phenylpropanoid 4CL low borderline
OoffiChr03g00193.1 Phenylpropanoid 4CL medium pass
OoffiChr03g00208.1 Phenylpropanoid 4CL medium pass
OoffiChr03g00218.1 Phenylpropanoid 4CL medium pass
OoffiChr03g00219.1 Phenylpropanoid 4CL medium pass
OoffiChr03g00219.2 Phenylpropanoid 4CL medium pass
OoffiChr03g00362.1 Phenylpropanoid 4CL medium pass
OoffiChr03g01327.1 Phenylpropanoid 4CL medium pass
OoffiChr03g01328.1 Phenylpropanoid 4CL medium pass
OoffiChr03g02112.1 Phenylpropanoid 4CL medium pass
OoffiChr03g03506.1 Phenylpropanoid 4CL low borderline
OoffiChr03g03506.3 Phenylpropanoid 4CL low borderline
OoffiChr04g00428.1 Phenylpropanoid 4CL medium pass
OoffiChr04g01858.1 Phenylpropanoid 4CL low borderline
OoffiChr04g02181.1 Phenylpropanoid 4CL medium pass
OoffiChr04g02240.1 Phenylpropanoid 4CL medium pass
OoffiChr05g00199.1 Phenylpropanoid 4CL low borderline
OoffiChr05g00199.2 Phenylpropanoid 4CL medium pass
OoffiChr05g00199.3 Phenylpropanoid 4CL low borderline
OoffiChr05g00199.4 Phenylpropanoid 4CL low borderline
OoffiChr05g00199.5 Phenylpropanoid 4CL medium pass
OoffiChr05g00906.1 Phenylpropanoid 4CL low borderline
OoffiChr05g00906.2 Phenylpropanoid 4CL low borderline
OoffiChr06g00354.1 Phenylpropanoid 4CL low borderline
OoffiChr06g02083.1 Phenylpropanoid 4CL medium pass
OoffiChr06g02083.2 Phenylpropanoid 4CL medium pass
OoffiChr06g02083.3 Phenylpropanoid 4CL medium pass
OoffiChr06g02083.4 Phenylpropanoid 4CL medium pass
OoffiChr07g02259.1 Phenylpropanoid 4CL medium pass
OoffiChr08g00204.2 Phenylpropanoid 4CL low borderline
OoffiChr08g00204.3 Phenylpropanoid 4CL low borderline
OoffiChr08g00204.4 Phenylpropanoid 4CL low borderline
OoffiChr08g00292.1 Phenylpropanoid 4CL medium pass
OoffiChr08g00692.1 Phenylpropanoid 4CL medium pass
OoffiChr08g01253.1 Phenylpropanoid 4CL medium pass
OoffiChr09g01560.1 Phenylpropanoid 4CL medium pass
OoffiChr10g01719.2 Phenylpropanoid 4CL medium pass
OoffiChr10g01719.3 Phenylpropanoid 4CL medium pass