PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status
OoffiChr11g00313.1 Phenylpropanoid 4CL low borderline
OoffiChr11g00313.2 Phenylpropanoid 4CL low borderline
OoffiChr11g00816.1 Phenylpropanoid 4CL medium pass
OoffiChr11g00816.2 Phenylpropanoid 4CL medium pass
OoffiChr11g01076.1 Phenylpropanoid 4CL low borderline
OoffiChr11g01076.2 Phenylpropanoid 4CL low borderline
OoffiChr12g00379.1 Phenylpropanoid 4CL low borderline
OoffiChr12g00439.1 Phenylpropanoid 4CL low borderline
OoffiChr12g00439.2 Phenylpropanoid 4CL low borderline
OoffiChr12g00600.1 Phenylpropanoid 4CL medium pass
OoffiChr12g00736.1 Phenylpropanoid 4CL low borderline
OoffiChr12g00736.2 Phenylpropanoid 4CL low borderline
OoffiChr01g00574.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g00575.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g00738.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g00741.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g00860.1 Phenylpropanoid C3'H/CYP98A medium borderline
OoffiChr01g00860.3 Phenylpropanoid C3'H/CYP98A medium borderline
OoffiChr01g01388.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g01496.1 Phenylpropanoid C3'H/CYP98A medium borderline
OoffiChr01g01519.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g01952.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g02076.2 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g02076.3 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g02077.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g02077.2 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g02077.4 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g02078.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g02078.2 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g02078.3 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g02079.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g02079.2 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g02418.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g02465.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g02465.2 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g03162.1 Phenylpropanoid C3'H/CYP98A medium borderline
OoffiChr01g03380.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g03959.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g03999.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr01g03999.2 Phenylpropanoid C3'H/CYP98A medium borderline
OoffiChr02g00060.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr02g00512.1 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr02g00512.2 Phenylpropanoid C3'H/CYP98A low borderline
OoffiChr02g00606.1 Phenylpropanoid C3'H/CYP98A medium pass
OoffiChr02g00611.1 Phenylpropanoid C3'H/CYP98A medium borderline
OoffiChr02g00613.1 Phenylpropanoid C3'H/CYP98A medium borderline
OoffiChr02g00614.1 Phenylpropanoid C3'H/CYP98A medium borderline
OoffiChr02g00616.1 Phenylpropanoid C3'H/CYP98A medium borderline
OoffiChr02g00621.1 Phenylpropanoid C3'H/CYP98A medium borderline
OoffiChr02g00622.1 Phenylpropanoid C3'H/CYP98A medium borderline