PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
OoffiChr02g01676.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr02g01887.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr02g01925.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr02g02547.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr02g02548.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr03g02371.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr05g00010.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr05g00689.1 Steroid BR6OX1/CYP85A1 low borderline
OoffiChr05g00689.3 Steroid BR6OX1/CYP85A1 low borderline
OoffiChr06g01688.1 Steroid BR6OX1/CYP85A1 low borderline
OoffiChr06g02205.1 Steroid BR6OX1/CYP85A1 low borderline
OoffiChr07g00637.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr07g00781.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr07g00783.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr07g00784.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr07g00785.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr07g00799.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr09g00272.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr09g00966.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr10g00284.1 Steroid BR6OX1/CYP85A1 low borderline
OoffiChr10g01306.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr10g01312.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr10g01313.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr10g01314.1 Steroid BR6OX1/CYP85A1 medium borderline
OoffiChr10g01474.1 Steroid BR6OX1/CYP85A1 low borderline
OoffiChr10g01474.2 Steroid BR6OX1/CYP85A1 low borderline
OoffiChr01g00574.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr01g00741.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr01g00860.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr01g00860.2 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr01g01496.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr01g02418.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr01g02465.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr01g02465.2 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr01g03162.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr01g03959.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr02g00060.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr02g00606.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr02g00610.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr02g00615.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr02g00616.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr02g00621.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr02g00623.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr02g00843.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr02g00843.2 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr02g01506.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr02g01507.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr02g01559.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr02g01876.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr02g01877.1 Steroid BR6OX2/CYP85A2 low borderline