PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
OoffiChr02g02014.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr02g02040.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr03g00223.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr03g00249.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr03g00259.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr03g00485.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr03g01003.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr03g01107.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr03g01699.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr03g01699.2 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr03g01866.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr03g01986.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr03g02059.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr03g02060.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr03g02131.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr04g00008.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr04g00120.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr04g00121.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr04g00264.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr04g00460.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr04g01444.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr04g01530.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr05g00484.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr05g01189.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr05g01770.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr05g01834.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr06g01322.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr06g01456.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr06g01457.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr06g01677.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr06g01854.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr06g01960.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr06g01961.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr06g01963.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr06g01967.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr06g01968.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr07g01067.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr07g01262.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr07g01263.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr07g02291.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr07g02296.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr08g00049.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr08g00062.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr08g00208.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr08g00414.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr08g01572.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr08g01573.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr09g00165.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr09g00198.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr09g00859.1 Steroid BR6OX2/CYP85A2 low borderline