PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
OoffiChr09g00860.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr09g00861.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr09g00862.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr09g00900.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr09g01379.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr09g01379.2 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr10g00291.2 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr10g00396.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr10g00720.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr10g00869.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr10g00928.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr10g00928.2 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr10g01113.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr10g01292.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr10g01368.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr11g00159.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr11g00167.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr11g00870.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr11g00891.1 Steroid BR6OX2/CYP85A2 medium borderline
OoffiChr12g01189.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr12g01574.1 Steroid BR6OX2/CYP85A2 low borderline
OoffiChr01g01732.1 Steroid CAS low borderline
OoffiChr01g01979.1 Steroid CAS low borderline
OoffiChr01g02553.1 Steroid CAS medium pass
OoffiChr01g02553.2 Steroid CAS medium pass
OoffiChr01g03126.1 Steroid CAS medium pass
OoffiChr01g03126.2 Steroid CAS medium pass
OoffiChr01g03126.3 Steroid CAS medium pass
OoffiChr01g04146.1 Steroid CAS medium pass
OoffiChr01g04146.2 Steroid CAS medium pass
OoffiChr02g01179.2 Steroid CAS medium pass
OoffiChr02g01179.3 Steroid CAS medium pass
OoffiChr02g01302.1 Steroid CAS medium pass
OoffiChr02g01305.1 Steroid CAS medium pass
OoffiChr02g01306.1 Steroid CAS medium pass
OoffiChr02g01306.2 Steroid CAS medium pass
OoffiChr02g01306.3 Steroid CAS medium pass
OoffiChr02g01306.4 Steroid CAS medium pass
OoffiChr02g01306.5 Steroid CAS medium pass
OoffiChr02g01306.6 Steroid CAS medium pass
OoffiChr02g01307.1 Steroid CAS medium pass
OoffiChr02g01307.2 Steroid CAS medium pass
OoffiChr02g01307.3 Steroid CAS medium pass
OoffiChr02g01307.4 Steroid CAS medium pass
OoffiChr02g01307.5 Steroid CAS medium pass
OoffiChr02g01307.6 Steroid CAS medium pass
OoffiChr02g01307.7 Steroid CAS medium pass
OoffiChr02g01875.1 Steroid CAS low borderline
OoffiChr02g01875.2 Steroid CAS low borderline
OoffiChr02g01888.1 Steroid CAS medium pass