PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status Best Target
OoffiChr02g02693.1 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
OoffiChr03g01535.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr03g01659.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr03g01916.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr03g01916.2 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr03g02867.2 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
OoffiChr03g02867.3 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
OoffiChr03g02867.4 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
OoffiChr03g02867.5 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
OoffiChr03g02867.6 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
OoffiChr03g02867.7 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
OoffiChr03g02867.8 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
OoffiChr04g00206.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
OoffiChr04g00262.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr04g00263.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr04g00265.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr04g00265.2 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr04g00265.3 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr04g00265.4 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr04g00269.2 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr04g00269.3 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr04g00269.4 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr04g00269.5 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr04g00462.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr04g00512.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr04g01760.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr04g01760.3 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr04g01760.4 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr04g01760.5 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr05g00718.1 Steroid CAS low borderline CAS__00002__sp_E2IUB0_CASS_KALDA
OoffiChr06g00281.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
OoffiChr06g00281.2 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
OoffiChr06g00281.3 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
OoffiChr06g00970.1 Steroid CAS medium pass CAS__00002__sp_E2IUB0_CASS_KALDA
OoffiChr06g01371.1 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
OoffiChr06g01372.1 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI
OoffiChr06g01376.1 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
OoffiChr06g01376.2 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
OoffiChr06g01376.3 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
OoffiChr06g01376.4 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
OoffiChr06g01379.1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
OoffiChr06g01380.1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
OoffiChr06g01673.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
OoffiChr07g00782.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr07g00782.3 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr08g00251.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr08g00413.2 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr08g00413.5 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
OoffiChr08g00609.1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
OoffiChr09g00099.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA