PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OoffiChr09g00999.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr09g00999.2 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr10g00001.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr10g00001.2 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr10g00001.3 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr10g00001.4 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr10g00002.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr10g00800.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr10g00800.2 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr11g00564.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr11g00858.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr11g00858.2 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr11g00858.3 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr11g00858.4 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr11g00858.5 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr11g00858.6 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr11g00858.7 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr11g00858.8 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr11g00858.9 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr11g00864.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr11g00865.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr11g00866.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr11g00936.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr12g00899.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr12g00899.2 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr12g00899.3 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr12g01570.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr12g01665.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr12g01665.2 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr12g01665.3 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr12g01665.4 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr03g00914.1 Steroid SQE medium pass
OoffiChr03g00914.2 Steroid SQE medium pass
OoffiChr03g00914.3 Steroid SQE medium pass
OoffiChr03g00914.4 Steroid SQE medium pass
OoffiChr03g00915.1 Steroid SQE medium pass
OoffiChr03g00915.2 Steroid SQE medium pass
OoffiChr03g00915.3 Steroid SQE medium pass
OoffiChr03g00915.4 Steroid SQE low borderline
OoffiChr03g00915.5 Steroid SQE medium pass
OoffiChr11g00536.1 Steroid SQE low borderline
OoffiChr11g00537.1 Steroid SQE medium pass
OoffiChr03g03230.1 Steroid SQS/FDFT1 high pass
OoffiChr03g03230.2 Steroid SQS/FDFT1 high pass
OoffiChr06g02503.1 Steroid SQS/FDFT1 medium pass
OoffiChr07g00640.1 Steroid SQS/FDFT1 high pass
OoffiChr07g00640.2 Steroid SQS/FDFT1 high pass
OoffiChr07g00640.3 Steroid SQS/FDFT1 medium pass
OoffiChr07g00640.4 Steroid SQS/FDFT1 medium pass
OoffiChr07g00640.5 Steroid SQS/FDFT1 high pass