PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
OoffiChr02g01496.2 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g02234.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g02501.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g02501.2 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g02536.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr02g03000.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr02g03089.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr03g00231.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr03g00634.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr03g00849.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr03g01731.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr03g01731.2 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr03g01733.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr03g01797.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr03g02017.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr03g02017.2 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr03g02774.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr03g02775.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr03g03237.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr04g00247.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr04g00436.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr04g00436.2 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr04g00693.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr04g01257.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr04g01260.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr05g00367.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr05g00634.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr05g00634.2 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr05g00634.3 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr05g00634.4 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr05g00634.5 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr05g00634.6 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr05g00635.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr05g00635.2 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr05g00777.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr05g00777.2 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr05g02092.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr05g02092.2 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr05g02092.3 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr05g02092.4 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr05g02092.6 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr05g02343.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr05g02345.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr06g00549.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr06g02511.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr07g00676.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr07g00676.2 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr07g01366.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr07g02350.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr08g01901.1 Steroid SMT1/SMT2/SMT3 low borderline