PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OoffiChr05g01147.1 Steroid DWF5 low borderline
OoffiChr01g00213.1 Steroid DWF7 medium pass
OoffiChr06g01344.1 Steroid DWF7 low borderline
OoffiChr09g01611.1 Steroid FK high pass
OoffiChr09g01611.2 Steroid FK high pass
OoffiChr10g00673.1 Steroid FK medium pass
OoffiChr01g00004.1 Steroid HYD1 high pass
OoffiChr03g01143.1 Steroid HYD1 low borderline
OoffiChr03g01143.2 Steroid HYD1 low borderline
OoffiChr03g01143.3 Steroid HYD1 low borderline
OoffiChr06g01507.1 Steroid HYD1 medium pass
OoffiChr02g02449.1 Steroid ROT3/CYP90C1 medium borderline
OoffiChr03g00866.1 Steroid ROT3/CYP90C1 medium borderline
OoffiChr04g01514.1 Steroid ROT3/CYP90C1 medium borderline
OoffiChr04g01514.2 Steroid ROT3/CYP90C1 medium borderline
OoffiChr05g00567.1 Steroid ROT3/CYP90C1 medium borderline
OoffiChr06g00035.1 Steroid ROT3/CYP90C1 medium borderline
OoffiChr06g01080.1 Steroid ROT3/CYP90C1 medium borderline
OoffiChr07g01615.1 Steroid ROT3/CYP90C1 medium borderline
OoffiChr11g00711.1 Steroid ROT3/CYP90C1 medium borderline
OoffiChr03g00061.1 Steroid SMO1/SMO2 medium pass
OoffiChr07g00014.1 Steroid SMO1/SMO2 medium pass
OoffiChr07g00014.2 Steroid SMO1/SMO2 medium pass
OoffiChr10g01470.1 Steroid SMO1/SMO2 medium pass
OoffiChr11g01676.1 Steroid SMO1/SMO2 medium pass
OoffiChr11g01676.2 Steroid SMO1/SMO2 medium pass
OoffiChr11g01676.3 Steroid SMO1/SMO2 medium pass
OoffiChr01g00377.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr01g00377.2 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr01g01331.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr01g01332.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr01g01332.2 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr01g01332.3 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr01g02081.1 Steroid SMT1/SMT2/SMT3 low borderline
OoffiChr01g02934.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr01g03241.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr01g03241.2 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr01g03241.3 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g01087.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g01092.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g01092.2 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g01092.3 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g01092.4 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g01092.5 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g01104.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g01105.1 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g01105.2 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g01105.3 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g01105.4 Steroid SMT1/SMT2/SMT3 medium pass
OoffiChr02g01496.1 Steroid SMT1/SMT2/SMT3 medium pass