PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
OoffiChr03g02373.1 Steroid DWF4/CYP90B1 medium borderline
OoffiChr03g02941.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr03g03550.1 Steroid DWF4/CYP90B1 medium borderline
OoffiChr04g00260.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr04g01023.3 Steroid DWF4/CYP90B1 medium borderline
OoffiChr04g01059.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr04g01339.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr05g01221.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr05g01339.1 Steroid DWF4/CYP90B1 medium borderline
OoffiChr05g01416.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr05g01510.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr05g01712.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr06g00094.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr06g00096.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr06g00289.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr06g00573.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr06g00574.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr06g01690.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr06g01767.1 Steroid DWF4/CYP90B1 medium borderline
OoffiChr06g01969.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr06g02162.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr07g01111.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr07g01163.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr07g01579.1 Steroid DWF4/CYP90B1 medium borderline
OoffiChr07g02235.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr07g02236.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr08g01160.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr08g01357.1 Steroid DWF4/CYP90B1 medium borderline
OoffiChr09g00663.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr09g00966.2 Steroid DWF4/CYP90B1 medium borderline
OoffiChr09g00966.3 Steroid DWF4/CYP90B1 medium borderline
OoffiChr09g01381.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr10g00190.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr10g00291.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr10g00294.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr10g00296.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr10g00319.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr10g01304.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr10g01310.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr10g01369.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr11g00198.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr12g00471.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr12g00749.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr12g00936.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr12g01186.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr12g01574.2 Steroid DWF4/CYP90B1 low borderline
OoffiChr12g01574.3 Steroid DWF4/CYP90B1 low borderline
OoffiChr12g01575.1 Steroid DWF4/CYP90B1 low borderline
OoffiChr02g01502.1 Steroid DWF5 medium pass
OoffiChr02g01502.2 Steroid DWF5 medium pass