PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OoffiChr05g01221.1 Alkaloid T3O medium pass
OoffiChr05g01510.1 Alkaloid T3O low borderline
OoffiChr05g01770.1 Alkaloid T3O medium borderline
OoffiChr05g01837.1 Alkaloid T3O medium borderline
OoffiChr06g00035.1 Alkaloid T3O medium pass
OoffiChr06g00094.1 Alkaloid T3O medium borderline
OoffiChr06g00096.1 Alkaloid T3O medium borderline
OoffiChr06g01322.1 Alkaloid T3O medium borderline
OoffiChr06g01456.1 Alkaloid T3O medium borderline
OoffiChr06g01457.1 Alkaloid T3O medium borderline
OoffiChr06g01677.1 Alkaloid T3O medium pass
OoffiChr06g01854.1 Alkaloid T3O medium borderline
OoffiChr06g01960.1 Alkaloid T3O medium borderline
OoffiChr06g01961.1 Alkaloid T3O medium borderline
OoffiChr06g01963.1 Alkaloid T3O medium borderline
OoffiChr06g01966.1 Alkaloid T3O medium borderline
OoffiChr06g01967.1 Alkaloid T3O medium borderline
OoffiChr06g01968.1 Alkaloid T3O medium borderline
OoffiChr06g02162.1 Alkaloid T3O medium borderline
OoffiChr06g02205.1 Alkaloid T3O medium borderline
OoffiChr07g00781.1 Alkaloid T3O medium borderline
OoffiChr07g00783.1 Alkaloid T3O medium borderline
OoffiChr07g00784.1 Alkaloid T3O medium borderline
OoffiChr07g00785.1 Alkaloid T3O medium borderline
OoffiChr07g00799.1 Alkaloid T3O medium borderline
OoffiChr07g01111.1 Alkaloid T3O medium borderline
OoffiChr07g01578.1 Alkaloid T3O medium pass
OoffiChr07g01579.1 Alkaloid T3O low borderline
OoffiChr07g01579.2 Alkaloid T3O low borderline
OoffiChr07g01579.3 Alkaloid T3O low borderline
OoffiChr07g01579.4 Alkaloid T3O medium pass
OoffiChr07g01579.6 Alkaloid T3O medium pass
OoffiChr07g01579.7 Alkaloid T3O medium pass
OoffiChr07g01580.1 Alkaloid T3O medium pass
OoffiChr07g01804.1 Alkaloid T3O low borderline
OoffiChr07g01806.1 Alkaloid T3O low borderline
OoffiChr07g02493.1 Alkaloid T3O medium pass
OoffiChr08g00049.1 Alkaloid T3O medium borderline
OoffiChr08g00062.1 Alkaloid T3O medium borderline
OoffiChr08g01572.1 Alkaloid T3O medium borderline
OoffiChr08g01573.1 Alkaloid T3O medium borderline
OoffiChr08g01807.1 Alkaloid T3O medium borderline
OoffiChr09g00165.1 Alkaloid T3O medium borderline
OoffiChr09g00198.1 Alkaloid T3O medium borderline
OoffiChr09g00272.1 Alkaloid T3O medium borderline
OoffiChr09g00859.1 Alkaloid T3O medium borderline
OoffiChr09g00860.1 Alkaloid T3O medium borderline
OoffiChr09g00861.1 Alkaloid T3O medium borderline
OoffiChr09g00862.1 Alkaloid T3O medium borderline
OoffiChr09g01379.1 Alkaloid T3O medium borderline