PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

2518
Candidate Protein Records
1998
Pathway-Level Records
4847
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OoffiChr09g01379.2 Alkaloid T3O medium borderline
OoffiChr09g01381.1 Alkaloid T3O medium borderline
OoffiChr10g00190.1 Alkaloid T3O medium pass
OoffiChr10g00284.1 Alkaloid T3O medium borderline
OoffiChr10g00291.2 Alkaloid T3O medium borderline
OoffiChr10g00294.1 Alkaloid T3O medium borderline
OoffiChr10g00296.1 Alkaloid T3O medium borderline
OoffiChr10g00298.1 Alkaloid T3O medium borderline
OoffiChr10g00316.1 Alkaloid T3O medium borderline
OoffiChr10g00319.1 Alkaloid T3O medium borderline
OoffiChr10g00396.1 Alkaloid T3O medium borderline
OoffiChr10g00466.1 Alkaloid T3O medium borderline
OoffiChr10g00869.1 Alkaloid T3O medium borderline
OoffiChr10g00928.1 Alkaloid T3O medium borderline
OoffiChr10g00928.2 Alkaloid T3O medium pass
OoffiChr10g01113.1 Alkaloid T3O medium pass
OoffiChr10g01292.1 Alkaloid T3O low borderline
OoffiChr10g01301.1 Alkaloid T3O medium borderline
OoffiChr10g01304.1 Alkaloid T3O medium borderline
OoffiChr10g01310.1 Alkaloid T3O medium borderline
OoffiChr10g01369.1 Alkaloid T3O medium pass
OoffiChr11g00167.1 Alkaloid T3O low borderline
OoffiChr11g00711.1 Alkaloid T3O medium pass
OoffiChr11g00804.1 Alkaloid T3O medium pass
OoffiChr11g00870.1 Alkaloid T3O medium borderline
OoffiChr12g00367.1 Alkaloid T3O medium pass
OoffiChr12g00408.1 Alkaloid T3O medium pass
OoffiChr12g00936.1 Alkaloid T3O medium borderline
OoffiChr12g01186.1 Alkaloid T3O medium pass
OoffiChr12g01187.1 Alkaloid T3O low borderline
OoffiChr12g01188.1 Alkaloid T3O medium pass
OoffiChr12g01189.1 Alkaloid T3O low borderline
OoffiChr12g01574.1 Alkaloid T3O medium borderline
OoffiChr12g01574.2 Alkaloid T3O medium borderline
OoffiChr02g01734.1 Alkaloid TDC low borderline
OoffiChr07g01206.1 Alkaloid TDC medium borderline
OoffiChr08g00256.1 Alkaloid TDC medium borderline
OoffiChr10g00022.1 Alkaloid TDC low borderline
OoffiChr10g00022.2 Alkaloid TDC low borderline
OoffiChr01g02727.1 Alkaloid TRI/TRII medium pass
OoffiChr01g02727.2 Alkaloid TRI/TRII medium pass
OoffiChr01g02727.3 Alkaloid TRI/TRII medium pass
OoffiChr01g02728.1 Alkaloid TRI/TRII medium pass
OoffiChr01g03855.1 Alkaloid TRI/TRII medium pass
OoffiChr01g03856.1 Alkaloid TRI/TRII medium pass
OoffiChr02g02273.1 Alkaloid TRI/TRII low borderline
OoffiChr03g01119.1 Alkaloid TRI/TRII medium pass
OoffiChr03g01120.1 Alkaloid TRI/TRII medium pass
OoffiChr03g01121.1 Alkaloid TRI/TRII medium pass
OoffiChr03g01121.2 Alkaloid TRI/TRII medium pass