PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
OoffiChr02g00946.1 Alkaloid BBE medium borderline
OoffiChr05g00902.1 Alkaloid BBE low borderline
OoffiChr06g01608.1 Alkaloid BBE medium borderline
OoffiChr06g01609.1 Alkaloid BBE medium borderline
OoffiChr06g01610.1 Alkaloid BBE low borderline
OoffiChr06g01612.1 Alkaloid BBE medium borderline
OoffiChr06g01613.1 Alkaloid BBE low borderline
OoffiChr06g01614.1 Alkaloid BBE medium borderline
OoffiChr07g00333.1 Alkaloid BBE low borderline
OoffiChr07g00333.2 Alkaloid BBE low borderline
OoffiChr08g00333.1 Alkaloid BBE low borderline
OoffiChr08g00334.1 Alkaloid BBE medium borderline
OoffiChr08g00898.1 Alkaloid BBE medium borderline
OoffiChr08g00899.1 Alkaloid BBE low borderline
OoffiChr10g00025.1 Alkaloid BBE low borderline
OoffiChr11g00928.1 Alkaloid BBE medium borderline
OoffiChr01g01687.1 Alkaloid CNMT low borderline
OoffiChr01g01687.2 Alkaloid CNMT low borderline
OoffiChr01g01687.3 Alkaloid CNMT low borderline
OoffiChr01g02577.1 Alkaloid CNMT low borderline
OoffiChr06g00140.1 Alkaloid CNMT low borderline
OoffiChr06g00316.1 Alkaloid CNMT low borderline
OoffiChr06g00316.2 Alkaloid CNMT low borderline
OoffiChr06g00316.3 Alkaloid CNMT low borderline
OoffiChr06g00316.4 Alkaloid CNMT low borderline
OoffiChr06g00316.5 Alkaloid CNMT low borderline
OoffiChr06g00316.6 Alkaloid CNMT low borderline
OoffiChr06g00388.2 Alkaloid CNMT low borderline
OoffiChr06g00388.3 Alkaloid CNMT low borderline
OoffiChr06g00388.4 Alkaloid CNMT low borderline
OoffiChr06g01704.1 Alkaloid CNMT medium borderline
OoffiChr07g01337.1 Alkaloid CNMT low borderline
OoffiChr07g01337.2 Alkaloid CNMT medium pass
OoffiChr07g01337.3 Alkaloid CNMT low borderline
OoffiChr07g01337.4 Alkaloid CNMT medium pass
OoffiChr07g01337.5 Alkaloid CNMT medium pass
OoffiChr07g01337.6 Alkaloid CNMT medium pass
OoffiChr07g01337.7 Alkaloid CNMT medium pass
OoffiChr07g01337.8 Alkaloid CNMT medium pass
OoffiChr12g00933.1 Alkaloid CNMT low borderline
OoffiChr01g00535.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr01g00720.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr01g01329.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr01g01481.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr01g01692.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr01g01838.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr02g01362.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr02g02209.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr02g02894.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr03g00130.1 Alkaloid CODM/T6ODM medium borderline