PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
OoffiChr03g00650.1 Alkaloid CODM/T6ODM low borderline
OoffiChr03g01243.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr03g01426.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr03g02195.2 Alkaloid CODM/T6ODM medium borderline
OoffiChr03g02559.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr03g03562.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr04g00393.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr04g01240.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr04g01561.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr04g01562.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr04g01989.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr04g01989.2 Alkaloid CODM/T6ODM medium borderline
OoffiChr05g00305.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr05g00306.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr05g00369.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr05g00462.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr05g00598.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr05g02207.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr06g00386.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr06g00483.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr06g00483.2 Alkaloid CODM/T6ODM medium borderline
OoffiChr06g00488.2 Alkaloid CODM/T6ODM medium borderline
OoffiChr06g00488.3 Alkaloid CODM/T6ODM medium borderline
OoffiChr06g00910.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr06g01701.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr07g00442.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr08g01903.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr10g00407.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr10g01359.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr10g01359.3 Alkaloid CODM/T6ODM medium borderline
OoffiChr13g00146.1 Alkaloid CODM/T6ODM medium borderline
OoffiChr01g03326.1 Alkaloid COR medium pass
OoffiChr01g03327.1 Alkaloid COR medium pass
OoffiChr02g00156.2 Alkaloid COR low borderline
OoffiChr02g00156.3 Alkaloid COR low borderline
OoffiChr03g00946.1 Alkaloid COR medium pass
OoffiChr04g00215.1 Alkaloid COR medium pass
OoffiChr04g00894.1 Alkaloid COR low borderline
OoffiChr04g00894.2 Alkaloid COR low borderline
OoffiChr04g00894.3 Alkaloid COR low borderline
OoffiChr04g00894.4 Alkaloid COR medium pass
OoffiChr05g01537.1 Alkaloid COR low borderline
OoffiChr05g01537.2 Alkaloid COR low borderline
OoffiChr05g01667.1 Alkaloid COR medium pass
OoffiChr10g00048.1 Alkaloid COR medium pass
OoffiChr10g00049.1 Alkaloid COR medium pass
OoffiChr10g00050.1 Alkaloid COR medium pass
OoffiChr10g00051.1 Alkaloid COR medium pass
OoffiChr10g00052.1 Alkaloid COR medium pass
OoffiChr10g00054.1 Alkaloid COR medium pass